Gene RPB_3540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3540 
Symbol 
ID3911342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp4051779 
End bp4052123 
Gene Length345 bp 
Protein Length114 aa 
Translation table11 
GC content56% 
IMG OID637885442 
Producthypothetical protein 
Protein accessionYP_487146 
Protein GI86750650 
COG category[S] Function unknown 
COG ID[COG2361] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.279096 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.479149 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCCGA GCGTTGACGA TCGCTTTCGC GATATCCTCG ATGCCATCGC CGAACTCGAC 
GATCTCCTCC AAGGCTACGA CTTCGAGAAG TTTTCCCGCG AGCGACGTAC CAGACTTCTG
ACCGAGCGCT TGCTGGAGAT CGTCTGCGAA GCCTCGCGCA GCATTCCAGA TGCAATCAAG
CAAGGCGAAC CGACGATCGA CTGGCGCAGC ATGATCGACT TTGGCAATTT GTTGCGCCAT
GCCTATCATT CGACGCGGGC GGATACGGTT TGGGAGATCA TTCGAAACCG ATTACCACCG
CTGCAAGCGT TCGCTGAACG TCGTCTTCAT CAATCAGGCG AGTAG
 
Protein sequence
MPPSVDDRFR DILDAIAELD DLLQGYDFEK FSRERRTRLL TERLLEIVCE ASRSIPDAIK 
QGEPTIDWRS MIDFGNLLRH AYHSTRADTV WEIIRNRLPP LQAFAERRLH QSGE