Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3458 |
Symbol | |
ID | 3911260 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 3965132 |
End bp | 3969025 |
Gene Length | 3894 bp |
Protein Length | 1297 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637885361 |
Product | gene transfer agent (GTA) orfg15 |
Protein accession | YP_487065 |
Protein GI | 86750569 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.384127 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.795293 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGCCG TCCCACGCTC ACACGAAGTA ACAACCATGG CAGCTCTTGT TCTTTCGGTC GCCGGTGCGG CGGCTGGTGC GGTGTTCGGG CCGGTCGGCG CGATGGCCGG GCGGATCGCG GGGGCGCTGA TCGGCAATGC GCTGGATCAG TCGCTGTTCG GCGCCGGGTC GAAATCGGTC GAGGGGCCGC GGCTGGCGGA TCTCGAGGTG ATGGCCTCGA CCGAAGGCGC GCCGATCCCG CGGGTCTACG GCCGGGTGCG GCTGGCGGGG CAGGTGATCT GGGCGACGCA ACTCGAGGAG GTGATCACCT CCGAGGAAAG TTCGTCCAGC GGCGGCAAGG GTCTCGGCGG CGGCGCGACG ACGACCACCA CGACCTACGC GTATTTCGCC AATTTCGCGG TCGGGCTGTG CGAGGGGCCG ATCGGCCGCG TCGCGCGGAT CTGGGCCGAC GGCAAGCCGC TCGATCTGTC GGGCCTCGGG CTTCGCATCC ATCACGGCGG CGAGGACCAG GCACCGGACG GTCTGATCGT CGCCAAGGAG GGCGCCGCCA ACGCGCCGGC CTATCGCGGG CTGGCCTATG TGGTGTTCGA GCGGCTGCCG CTGGCCGACT ACGGCAACCG GATTCCGCAA ATGTCGTTCG AGATCGTGCG GCCGATCGGC GGGCTCGAAC AGATGGTGCG CGCGGTGACG CTGATCCCCG GCACCACCGA ATACGGCTAC GAGCCGTCGA CATTGGTGCA GATCCTCGAC CGAGGCACCT CGACGCCGGA GAACCGCCAC GTCGCCCACG CGGTCTCCGA CGTGGTCGCC TCGCTCGACG AATTGCAGGG CGTGTGCCCG CGGCTGGAGC GCGTCGCGAT CGTGGTGGCG TGGTTCGGCT CCGATCTGCG CGCCGGCCAG TGCAGCGTGC GGCCGGGCGT CGAGAACCGC GACAAATGGG TCGCCGGCGC GAGCTGGTCG GTCGACGGCG CGCACCGCGG CAATGCCTGG CTGGTGTCGC AGGTCGACGG CCGCCCCGCC TTTGGCGGCA CGCCGTCCGA CGACAGCGTG CGACATCTGA TCGGCGAGCT GAAGGCGCGC GGGCTGAAGG TGACGTTCTA TCCGTTCGTG ATGATGGACG TGCCGGCTGC TAACAGCCTG CCGAACCCGT GGACCGGCGC CGCGCCGCAG CCGCCTTATC CGTGGCGCGG GCGGATCAGT TGCGATCCGG CGCCGGGCGT GGCCGGCTCG CCGCAGGGTA GCGCGACGGC GGCGGCGCAG GTCGACAGTT TCTTCGCCGG CGGCGACTGG AATTATCGCC GGATGATTTT GCACTACGCG CGGCTTTGCG CGGAGGCCGG CGGCGTCGAT GCGTTCCTGA TCGGCTCGGA GCTGCGCGGG CTGACGCGGG TGCGCTCCGG CGCGGGCGTG TATCCGGCGG TGCAGCAGCT CGTCGCGCTG GCGAACGACG TGAAAGCGAT CGTCGGCGGC GGCACGCTCG TCACCTATGC GGCGGACTGG ACCGAATACG GCGCCGACGT CGTCACGCCG GACGCTTCCG AAGTGCGGTT TCCGCTCGAT CCGCTGTGGG CAGCGCCCGC GATCGGCGTG ATCGGGATCG ACTACTACGC GCCGCTCGCC GACTGGCGCG ACGACGCCGG CCATCTCGAC GCGGCGATCG CCGCTTCGAC CTGGGACCGC CTCTATCTCG ACCGCAACGT CACCGCCGGC GAGGCATTCG ACTGGTACTA TCCGGACGAG GCCGCGCGCG TGGCGCAAAG CCGCGTGCCG ATCACCGATG GGCTCGGCAA GCCGTGGACC TTCCGGGTCA AGGACATCAA GAGCTTCTGG TCGCAGCCGC ATCACGAACG CGTCGGCGGC GTCGAGCTCG CCGCGCCGAC CGCGTGGGCG CCGATGAGCA AGCCGGTGTG GCTGACGGAA GTCGGCTGCC CCGCGGTCGA CAAGGGCGCC AACCAGCCGA GCGTGTTTCC CGATCCGAAA TCCAGCGAGA ACTACGCGCC GTATTTCTCC AGCGGCGACC GCGACGACCT GATCCAGCGG CGCTATCTCG AAGCGATCCT CGCCGCGTTC GATCCGGTGT TCGGCGCCAG CGAGGCGCGC AATCCGCTGT CGCCGGTGTA TGGCGGCCGG ATGATCGATC CGTCGGCGAT CCATCTGTGG AGCTGGGACG CGCGGCCCTA TCCGGTGTTT CCGGCCGCCG ACGAGGTCTG GAGCGACGCG CCGAACTGGC AGAGCGGGCA CTGGCTGACC GGGCGGCTCG GCAATGCGCC GCTGGATGCG CTGGTGGCGC AGCTCTGCGC CGACAGCGGC GTCGTCGGCG TCGATGCGAG CGCGTTGCGC GACGCCTGCG ACGGCTATGT GGTCGACCGG CCGATGACGC CGCGGGCGAT GATCGAGCCG CTGGCGATGG CCTACGCGTT CGACGCCACG GCGGCCGACG GCACGCTGCG CTTCGTGCAG CGCGGCGGCG CGCCGGTGGC CGAATTGACC GAGGACGATC TGGTGCTGCC GGACAAGGGC GCCTTGTCGC GGCTGACGCG GGCGCAGGAG ACCGAGCTGC CGCTCGAGGT GGCGTTCGGC TTCACCGACG CGATCGCCGA CTATCGCCGC GCCGCGGCGG CGTCGCGCCG GCTGGTCGGC GGCGCGCATC GCATCGTCCA CGCCGATCTC GCGGTGGTGA CCAACGACGC CGCCGCGGCG CGACGCGCCG AGATCTTCCT GCAGGATCTG TGGGCCGGAC GCGAGACCGC GAGCTTCGCG CTCGGGCCGC AGCGTCTGGC GCTGGCGCCC GGCGATGTGG TGGCGCTGAC GCTGAACGAT CGGCGGCGGC TGTTCGAGAT CAGCGAAGTG GTCGACACCC AATCGCGCGC CGTCAAGGCG CGCAGCATCG ACCCCGAAGT GTTCGCGCTG CCGCAGCGCG CGCCGCGCCG GATCACGCCG GCAATCCCGG CGGCGCTGGG GCCGGCGCAT GTGGTGGCGC TCGACCTGCC GGTGATCGAC AACACCGCGC CGGACGTACT GACGCGGCTC GCGGTGTTCG CCAATCCCTG GCCGGGATCG GAAGTGATCT ACGCGTCCGC CGACGGCGCG AGCTATCAGC CGCTGGCGAG CGCGACGGTG CGCGCGATCA TCGGCGAGAC GCTCGATCCG CTGCCGCGCG GGCCTGTGGC GGTGTGGGAC CGCGGCAACC GGCTGCGGGT GCGGATTCTC GGCGGCGCGC TGTCGTCGCT GTCGGAGGCG CGGGTGCTCG ACGGCGGCAA CGCCGCGGCG GTGCAGAACC CCGACGGCGA GTGGGAGATC CTCCAATTCG CGCAGGCCGA ACTGATCGAC GGCAACACGT ACTTGCTGTC GCGGCTGCTG CGCGGCCAGG CCGGCAGCGA GCAGGCGATG CGCGACCCGG TGCCGGCCGG CGTGCCGTTC GTGCTGCTCG ACCGGCATCT GGTGCCGTTG GCGCGCGGGC TCGACGCGCT CGGGCGGGCG AAGGCGTTGC GCGTGGTTGC GGCGGGACGC AGCCACGACG ATGCCAGCGC GGTGACGCTG AGCGTGACGC CGGGGCCGAC GGCGCTGCGG CCGCTGGCGC CGGTGCATCT GAGGGCCAGG CGCGAGGTCG ATGGCGTGAA TCTGTCGTGG ATCCGCCGCA CCCGGATCGA CGGCGATGGC TGGGGCCTCG AGGTGCCGCT CGGCGAGGCC AGCGAGGCCT ATGTGATCGA CATCCTCGCA CCGGACGGCG CATTGGTTCG CACGCTCAGC AGCGCCGCGC CGCAGGCGCT GTATCCGGCG GCTTCCGAAC TCGCCGATTT CGGCGCGCCG CAACAGGGCC TGCGCGTCCG CGTCGCGCAA CTCTCCGCCG GCGTCGGCCG CGGCTTCGCC GCCGACGCGA CGCTCGCACT TTAG
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Protein sequence | MPAVPRSHEV TTMAALVLSV AGAAAGAVFG PVGAMAGRIA GALIGNALDQ SLFGAGSKSV EGPRLADLEV MASTEGAPIP RVYGRVRLAG QVIWATQLEE VITSEESSSS GGKGLGGGAT TTTTTYAYFA NFAVGLCEGP IGRVARIWAD GKPLDLSGLG LRIHHGGEDQ APDGLIVAKE GAANAPAYRG LAYVVFERLP LADYGNRIPQ MSFEIVRPIG GLEQMVRAVT LIPGTTEYGY EPSTLVQILD RGTSTPENRH VAHAVSDVVA SLDELQGVCP RLERVAIVVA WFGSDLRAGQ CSVRPGVENR DKWVAGASWS VDGAHRGNAW LVSQVDGRPA FGGTPSDDSV RHLIGELKAR GLKVTFYPFV MMDVPAANSL PNPWTGAAPQ PPYPWRGRIS CDPAPGVAGS PQGSATAAAQ VDSFFAGGDW NYRRMILHYA RLCAEAGGVD AFLIGSELRG LTRVRSGAGV YPAVQQLVAL ANDVKAIVGG GTLVTYAADW TEYGADVVTP DASEVRFPLD PLWAAPAIGV IGIDYYAPLA DWRDDAGHLD AAIAASTWDR LYLDRNVTAG EAFDWYYPDE AARVAQSRVP ITDGLGKPWT FRVKDIKSFW SQPHHERVGG VELAAPTAWA PMSKPVWLTE VGCPAVDKGA NQPSVFPDPK SSENYAPYFS SGDRDDLIQR RYLEAILAAF DPVFGASEAR NPLSPVYGGR MIDPSAIHLW SWDARPYPVF PAADEVWSDA PNWQSGHWLT GRLGNAPLDA LVAQLCADSG VVGVDASALR DACDGYVVDR PMTPRAMIEP LAMAYAFDAT AADGTLRFVQ RGGAPVAELT EDDLVLPDKG ALSRLTRAQE TELPLEVAFG FTDAIADYRR AAAASRRLVG GAHRIVHADL AVVTNDAAAA RRAEIFLQDL WAGRETASFA LGPQRLALAP GDVVALTLND RRRLFEISEV VDTQSRAVKA RSIDPEVFAL PQRAPRRITP AIPAALGPAH VVALDLPVID NTAPDVLTRL AVFANPWPGS EVIYASADGA SYQPLASATV RAIIGETLDP LPRGPVAVWD RGNRLRVRIL GGALSSLSEA RVLDGGNAAA VQNPDGEWEI LQFAQAELID GNTYLLSRLL RGQAGSEQAM RDPVPAGVPF VLLDRHLVPL ARGLDALGRA KALRVVAAGR SHDDASAVTL SVTPGPTALR PLAPVHLRAR REVDGVNLSW IRRTRIDGDG WGLEVPLGEA SEAYVIDILA PDGALVRTLS SAAPQALYPA ASELADFGAP QQGLRVRVAQ LSAGVGRGFA ADATLAL
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