| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3449 |
|---|
| Symbol | |
|---|
| ID | 3911251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 3955410 |
|---|
| End bp | 3955907 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637885352 |
|---|
| Product | cytochrome c-type biogenesis protein CcmE |
|---|
| Protein accession | YP_487056 |
|---|
| Protein GI | 86750560 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2332] Cytochrome c-type biogenesis protein CcmE |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.750289 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0666927 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGTA AGCAGCGGCG GTTGATGATG ATCGGTGGCG CCGGCGTGGT GCTCGTGGTC
GCAGTGGGAC TGGTGCTGAA CGCGATGCGC GGCTCGATCG TGTTCTTCTC GACGCCGAAG
ATGGTGCACG AGCAGAACAT CGAGGCCGGA AAGCGGTTCC GGCTCGGCGG CGTGGTCGAG
CCCGGCTCGC TCACGCGCGG CGATCAGCTC GCGGTGGCGT TCAAGGTTTC GGACGGCGAC
GCCACCGTGC CGGTGGCGTT CAAGGGCATT CTGCCGGACC TGTTCCGCGA GGGGCAGGGC
GTGATCGCCG AGGGCGCGCT CGACACCGCC GGCGTGTTCA AGGCCGACAC CGTGCTCGCC
AAGCACGACG AGACCTACAT GCCCAAGGAC GTGGCCGACG CGCTGAAGAA GCAGGGCCAC
TGGAAGGACG ATTACGAGAA GAAGCCGCCC GGGCCCGGTG CGGCGGCCTC CGCCGACGCC
ATGAGGCCGG CGCGATGA
|
|---|
| Protein sequence | MTRKQRRLMM IGGAGVVLVV AVGLVLNAMR GSIVFFSTPK MVHEQNIEAG KRFRLGGVVE
PGSLTRGDQL AVAFKVSDGD ATVPVAFKGI LPDLFREGQG VIAEGALDTA GVFKADTVLA
KHDETYMPKD VADALKKQGH WKDDYEKKPP GPGAAASADA MRPAR
|
|---|
| |