| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3418 |
|---|
| Symbol | |
|---|
| ID | 3911220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 3906995 |
|---|
| End bp | 3908104 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637885321 |
|---|
| Product | alcohol dehydrogenase |
|---|
| Protein accession | YP_487025 |
|---|
| Protein GI | 86750529 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1062] Zn-dependent alcohol dehydrogenases, class III |
|---|
| TIGRFAM ID | [TIGR02818] S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.128659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.268531 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCC GCGCCGCCGT CGCATTCGAG GCCAAGAGGC CGCTCGAAAT CGTCGAACTG
GATCTCGACG GGCCGAAGGC CGGCGAAGTG CTGGTCGAGA TCAAGGCGAC CGGGATCTGC
CACACCGACG CCTATACGCT CGACGGCCTC GACTCCGAAG GCATCTTCCC CTCGATCCTC
GGCCACGAGG GCGCGGGCAT CGTGCGCGAG GTCGGCGCCG GCGTCACCTC GGTGAAGCCC
GGCGATCACG TCATTCCGCT GTACACGCCG GAGTGCCGGC AGTGCAAAAG CTGCCTGAGC
CAGAAGACCA ATCTGTGCAC CTCGATCCGC GCCACCCAGG GCAAGGGCGT GATGCCGGAC
GGCACCTCGC GCTTCAGCTA TCAGGGCAAG CCGATCTATC ATTACATGGG CTGCTCGACG
TTTTCGAACT TCACCGTGCT GCCGGAGATC GCGCTGGCGA AGATCCGCGA CGACGCGCCG
TTCGACAAGA GCTGCTACAT CGGCTGCGGC GTCACCACCG GCGTCGGCGC GGTGGTCAAC
ACCGCGAAGG TGACGCCCGG CTCCAATGTC GTGGTGTTCG GCCTCGGCGG CATCGGCCTC
AACGTCATTC AGGGCGCGCG GATGGTCGGC GCCGACAAGA TCGTCGGCGT CGACATCAAC
GACGACAAGG AGGAATGGGG CCGCCGCTTC GGCATGACGC ATTTCGTCAA TCCGAAGACA
ATCGACGGCG ACATCGTCCA GCACCTCGTC GGCCTGACCG ACGGCGGCGC CGACTACACG
TTCGACTGCA CCGGCAACAC CACTGTGATG CGCCAGGCGC TGGAAGCCTG CCACCGCGGC
TGGGGCGTCT CGGTGGTGAT CGGCGTCGCC GAAGCCGGCA AGGAAATCTC GACGCGGCCG
TTCCAGCTCG TCACCGGCCG GGTCTGGAAA GGCAGCGCCT TCGGCGGCGC CCGCGGCCGC
ACCGACGTGC CGAAAATCGT CGACTGGTAC ATGAACGGCA AGATCGAGAT CGACCCGATG
ATCACCCACG TGCTCAAGCT CGAGGAGATC AACAAGGGTT TCGAGCTGAT GCACGAGGGC
AAGTCGATCC GGTCGGTGGT GGTGTTCTAG
|
|---|
| Protein sequence | MKTRAAVAFE AKRPLEIVEL DLDGPKAGEV LVEIKATGIC HTDAYTLDGL DSEGIFPSIL
GHEGAGIVRE VGAGVTSVKP GDHVIPLYTP ECRQCKSCLS QKTNLCTSIR ATQGKGVMPD
GTSRFSYQGK PIYHYMGCST FSNFTVLPEI ALAKIRDDAP FDKSCYIGCG VTTGVGAVVN
TAKVTPGSNV VVFGLGGIGL NVIQGARMVG ADKIVGVDIN DDKEEWGRRF GMTHFVNPKT
IDGDIVQHLV GLTDGGADYT FDCTGNTTVM RQALEACHRG WGVSVVIGVA EAGKEISTRP
FQLVTGRVWK GSAFGGARGR TDVPKIVDWY MNGKIEIDPM ITHVLKLEEI NKGFELMHEG
KSIRSVVVF
|
|---|
| |