| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3410 |
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| Symbol | |
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| ID | 3911212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3897362 |
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| End bp | 3898435 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637885313 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_487017 |
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| Protein GI | 86750521 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.795724 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.633009 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCGT CGCGGGTCAC AGGGGTGATT GCAGCCTGCC TGCTCATCGC GGGCTGTCAG
GAAAAAGCCA GCCAGCCGGA ACCGATCCGG CCGGTGCTGT CGACCGTGGT CGCCCCGCTC
GAAGCGACCA GCATCGGCGT CGTCGGCACG ATCGAGGCGC GGTTCAAGAC CGACTACGGG
TTTCGTGTCC TCGGCCGCAT GATCGCGCGG CCCGTCAATA TCGGTGACAC CGTCGCGAAG
GGGCAGGCGC TCGCAGCGAT CGATCCGTTG GCTGCCGAAT TTTCCGTCAG GTCCGCTGTG
GCGGATTTCG CCTCGGCTCA GGCGCAACTG GTGAACGCCA GCAGCAACGT CAGCCGCCAG
CGCACCTTGA TCGAAACCGG TGCCATTACC AAAGCCACGC TCGATTCGGC GGAGCAGGCC
AATTCCGCCG CGCAGGCCGC GGTCGTCCGG GCCCAGTCGA GCCTGACCAA AGCGCGCGAG
CAATTGAGCT ACACCAAGCT CGCCGCCGAA TATGCCGGCG TCGTCACCGC GGTGAGCGTG
CAGGTCGGCC AGATCGTCAG TCCCGGCCAG ACCGTGGTGA CCGTCGCCCG ACCGGATGTC
CGCGAGGCGG TGATCGACGT CGCCGACGAT CTCGCCGGCG CCTTGAAGGT CGACATGCCG
CTGAAGGTCG CGCTGCAGCT CGATCCGAAA ATCCGGGTCG ACGGAAAAGT GCGCGAGGTC
GCACCGCAAG CCGATCAGGT GACGCGCACC CGGCGGGTTC GGATCACGCT GGAGAATCCG
CCGGAGACGT TCCGTCTCGG CTCCACCATC ACCACGCTGA TCCCGGGCAA GCCGACGCGG
GGATTTCGGC TGCCGGCCAC GGCGATCCTG ACCGAACGCG GCCAGTCGAG CGTCTGGATG
ATCGATACGC AAGCCGGAAC GGTGACCAAA CGCAACGTGC AGATCGTCAC CAACGACGAC
GGTTCGGTCG AGGTGGTCGA GGGAATTGCG GCGGGCGCAC GTATCGTGAC GGCGGGCGTG
CATCATCTCG TGGAAGGCCA GAAAATCCGC TTCGGAGAGG GTAGCTCGCT GTGA
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| Protein sequence | MTASRVTGVI AACLLIAGCQ EKASQPEPIR PVLSTVVAPL EATSIGVVGT IEARFKTDYG
FRVLGRMIAR PVNIGDTVAK GQALAAIDPL AAEFSVRSAV ADFASAQAQL VNASSNVSRQ
RTLIETGAIT KATLDSAEQA NSAAQAAVVR AQSSLTKARE QLSYTKLAAE YAGVVTAVSV
QVGQIVSPGQ TVVTVARPDV REAVIDVADD LAGALKVDMP LKVALQLDPK IRVDGKVREV
APQADQVTRT RRVRITLENP PETFRLGSTI TTLIPGKPTR GFRLPATAIL TERGQSSVWM
IDTQAGTVTK RNVQIVTNDD GSVEVVEGIA AGARIVTAGV HHLVEGQKIR FGEGSSL
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