| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3391 |
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| Symbol | |
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| ID | 3911193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 3875035 |
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| End bp | 3876876 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637885294 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_486998 |
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| Protein GI | 86750502 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.260794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCTA TGTTGATCCA CTACATGGCG CCGATCATGT TCGGCTCCCT GGTGATCTTC
CTGTTGCTCG GCTATCCGGT CGCGTTCTCG CTCGCCGCCA ACGGCCTGAT GTTCGCCTTC
ATCGGCATCG AGCTCGGGCT GTTCCGCCCC GACTTCATGC AGGCGCTGCC CGAACGCGTC
TACGGCGTGA TGAACAACGA CACGCTGCTG GCGATTCCGT TCTTCACCTT CATGGGGCTG
GTGCTGGAGA GATCCGGCAT GGCCGAGGAC CTGCTCGAAA CCATCGGGCA GTTGTTCGGC
TCGATCCGCG GCGGCATCGC CTACGCGGTG GTGTTCGTCG GCGCGCTGCT CGCCGCCACC
ACCGGCGTGG TCGCCGCCTC GGTGATCTCG ATGGGCCTGA TCTCGCTGCC GATCATGCTG
CGCTACGGCT ACGACCGCCG CGTCGCCACC GGCGTCATCG CCGCATCCGG CACGCTGGCG
CAGATCATTC CGCCGTCGCT GGTGCTGATC GTGATGGCCG ACCAGCTTGG CCGCTCGGTC
GGCGACATGT ACGAAGGCGC GTTCATTCCC GGCATCGTGC TGTCGCTGCT GTATGCCGGC
TACATCTTCC TGGTGACGGT GTTCGCCCCG AAGGCGGCGC CCGGCCTGCC GCTGGAAGCG
CAGACGCTGC GCGAACACGA CACCCTGCAG AACCCGATGA TGATGCCGCT GGCGGCGATC
TCCGCCGCCG CGACCGCCTA TTTCTTCGCG GTGCATCTCG ACGGATTCAG CTGGAGCATG
CCGGCGTTCG ACAAGGTCGG CCTGCCCGCG ATGGCGATGC AGGGCTTCTG GTTCGTGGTG
CTGCTCGCCG TGCTGTTCCG GCCGTTCATC GGCGTGATCC GCACCATGAC GATCTCGCTG
TATCTGGTCG TGGTGCTGTC GACCACGATC GGCATCGTCG CGATGCGCTT CACCGATGTG
AAGGGCGGCG CGGACTACGT GGTGCTGACG ATGTCGGTGA CCGTCGGGCT GTCGTTCGTC
ATCGCCGTGC TCAACCGGGT GCTGCGCCTG AAGCTGCTGT CGCGGCTCGC CGAGCAGGTC
GTGTTCGTGA TGGTGCCGCC GCTCGGGCTG ATCTTCCTGG TGCTCGGCAC GATCTTCATC
GGCGTCGCCA CCCCGACGGA AGGCGGCGCG ATGGGCGCCG CGGGCGCGGT GATTCTCGCG
CTGATGAAAG GACGGCTGAC CTTCGACCTG ACCCGCCAGG CCACCGAGGC GACCGCCAAG
CTGTCGGCCT TCGTGGTGAT GATCCTGGTC GGCGCCCGGG TGTTCTCGCT GACCTTCTAC
GGCGTCGACG GCCATCGCTG GGTCGAGGAG CTGCTGACCT CGCTGCCCGG CGGCCAGCTC
GGCTTCCTGG TCTTCGTCAA CGCCCTGGTG TTCGTGCTGG CGTTCTTCCT CGACTTCTTC
GAGCTCGCCT TCATCATCAT CCCGCTGCTC GGCCCCGCGG CGGAGAAGCT CGGCATCGAC
CTGATCTGGT TCGGCATCAT CCTCGCGGTC AACATGCAGA CCTCGTTCAT GCATCCGCCG
TTCGGCTTCG CGCTGTTCTA TCTGCGCTCG GTGGCGCCGA AGGAATCCTA TCTCGACCGG
GTCACCGGCA AGCGGATGGC GCCGATCACC ACGGGACAGA TCTATTGGGG CGCGGTGCCG
TTCGTGGTGA TCCAGCTGAT CATGGTCGGA CTGGTGATCG CCTTCCCGGC GATGGTGATG
CACTACAAGG GCGCCGCCAG CACGGTCGAT CCGTCGAAGA TCGAATTCGA CATCCCGCAG
ATGGAAACCC CGCAGCTCGA TTTCGGCCCG CCGAAATTCT GA
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| Protein sequence | MTAMLIHYMA PIMFGSLVIF LLLGYPVAFS LAANGLMFAF IGIELGLFRP DFMQALPERV
YGVMNNDTLL AIPFFTFMGL VLERSGMAED LLETIGQLFG SIRGGIAYAV VFVGALLAAT
TGVVAASVIS MGLISLPIML RYGYDRRVAT GVIAASGTLA QIIPPSLVLI VMADQLGRSV
GDMYEGAFIP GIVLSLLYAG YIFLVTVFAP KAAPGLPLEA QTLREHDTLQ NPMMMPLAAI
SAAATAYFFA VHLDGFSWSM PAFDKVGLPA MAMQGFWFVV LLAVLFRPFI GVIRTMTISL
YLVVVLSTTI GIVAMRFTDV KGGADYVVLT MSVTVGLSFV IAVLNRVLRL KLLSRLAEQV
VFVMVPPLGL IFLVLGTIFI GVATPTEGGA MGAAGAVILA LMKGRLTFDL TRQATEATAK
LSAFVVMILV GARVFSLTFY GVDGHRWVEE LLTSLPGGQL GFLVFVNALV FVLAFFLDFF
ELAFIIIPLL GPAAEKLGID LIWFGIILAV NMQTSFMHPP FGFALFYLRS VAPKESYLDR
VTGKRMAPIT TGQIYWGAVP FVVIQLIMVG LVIAFPAMVM HYKGAASTVD PSKIEFDIPQ
METPQLDFGP PKF
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