| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3378 |
|---|
| Symbol | |
|---|
| ID | 3911180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 3862673 |
|---|
| End bp | 3863422 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637885281 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_486985 |
|---|
| Protein GI | 86750489 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.394495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0844825 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATCC ACGATTCTGC CGCCGTCGCC TCCGATCTGT CGCGCCCTGC CACGCCGGCG
GCGTTCGCCG AGGCGGCGAT GCTGTCGCTG CGGCCGGTGT TCGGGGCGTC GCGGGCGGTG
TTGTCCGACC GGCAGCGCGG GCGGCCGGGC GAGATGCATT TCGTCAACTG GCCGTCCTGG
TGCCAGGCGC ATTATTGCGC CGAGGTGAGG GCGCGCGATC CGATCCGGAG TTGGCTCGAT
CGGGAGGCGT CGGAGAACGG CGTGACGCGG CTGTCGGAGT TGCTGCCGGC TACCCGCCGC
GCGGCGCTCC CGCGCGAGAC GCTGCTGGCC GACAGCGGCG CCGGCTTCGT GCTGATCATG
GCGCTGCGTG AGCAGAACCG CATCGTCGGC GCGCTCAGTC TGGTCCGCGA CGCCGGGCAC
GGCGATTTCG ACGAGCGTGA CCGCGGGCTG GCGCTGGCGC TGCTGCCGCT GCTGGAGATG
GCGTATCACG GCGTCATCGC GCGCGGTGCG GCGACGGTGC CGCTGTTTGC CGGCAACGAT
CCGTTGCACG CGTTGACGCC GCGCGAACGG CAGGTCGCGG CGCTGGCGGC GGCCGGCCAT
CCGAACAAAT CGATCGCGCG CATGCTCGAT GCCAGCCCGT GGACGATCAA GAATCACATG
CGCGCGGTGC TCGACAAGAC CGGCACGCGC AACCGCACCG AACTGAGCGC GCTGATCGGA
TCGCAGCGTG AAACGGCCCG GCCGGGCTAG
|
|---|
| Protein sequence | MPIHDSAAVA SDLSRPATPA AFAEAAMLSL RPVFGASRAV LSDRQRGRPG EMHFVNWPSW
CQAHYCAEVR ARDPIRSWLD REASENGVTR LSELLPATRR AALPRETLLA DSGAGFVLIM
ALREQNRIVG ALSLVRDAGH GDFDERDRGL ALALLPLLEM AYHGVIARGA ATVPLFAGND
PLHALTPRER QVAALAAAGH PNKSIARMLD ASPWTIKNHM RAVLDKTGTR NRTELSALIG
SQRETARPG
|
|---|
| |