| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3370 |
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| Symbol | |
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| ID | 3911172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 3853080 |
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| End bp | 3855155 |
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| Gene Length | 2076 bp |
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| Protein Length | 691 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637885273 |
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| Product | cytochrome c, class I |
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| Protein accession | YP_486977 |
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| Protein GI | 86750481 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2010] Cytochrome c, mono- and diheme variants
[COG3258] Cytochrome c |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.384758 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0138407 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTCGA ACAAGCGCAG CCTCGGCAAA CGCCTCGGTC TGATCGCGGC CTTTGCTGTC
GTCGCGATCG GCGGCGCCGC GGCCTGGATC GTGCAACCGC CGCCGATCGA GCGCAACGAC
CCGGGTTTCG GCGCCAATGT CGATCCCGCG CTGATCGCGC GCGGTGAATA TGTCGCGCGG
CTGGGCGACT GCGTCGCCTG CCACACCGCC GAGGGCGGAC CTCTGATGGC TGGCGGCCGG
GCGCTCGAGA CGCCGTTCGG CAAGGTGTAC TCGACCAATG TGACGCCCGA TCCGAAAACC
GGCATCGGGC AATGGTCGTT CGGCGCGTTC GATCGCGCGA TGCGCAAGGG CGTCTCGGCG
GACGGTCACA ATCTCTATCC GGCGATGCCC TACCCGTCTT ACGCCAAGAT GACGGACGAC
GACATGAAGG CGCTGTGGGC CTATCTCCTC AAGGGCCTCG CGCCGGTCGA GAAGGCCAAT
CTCCCGCTCG AGATGCAGTT TCCGTTCAAC ATGCGCATCG CGCTCGCCGC CTGGAATTTC
GCCTTCCTGG ATGCGACGCC GTTCAAGGCC GAGCCTGCGA AGGATGCTGT GTGGAATCGC
GGCGCGTATC TCGTCCAGGG TCTCGGCCAT TGCGGCGCCT GTCACACGCC GCGCGGCATC
GGTTTCCAGG AAAAGGCGAT GAGCGACGCC GGACCGGCGG GCCATTTCTA TCTCGCCGGC
GCCAAGGTCG AAAACTGGAA TGCGATCGAG CTACGCGATT TGTGGACCGT CGAGGACACC
GTCCTGTTGC TGAAGACCGG CCAGAACCGC TTCGCCACCG CGTCCGGCAG CATGACCGAT
GTCATCCTGC ATTCGACGCA GGGACTCTCC GACCAGGACC TGACGGCGAT CGCGACCTAT
CTCAAGGCGC TGCCGTCCGA CCGGCCGAAG GCCGAGCCAC GGATCGCATC GACCGAGGCG
CCTGCGGCCA CCTTCACCAC CCGCGGCGGG CTCGGCTACG CACAGTTCTG CACCGACTGT
CACCGGGCCG ACGGCGCCGG CGTGAAGGGC ATCTTCCCGC CGCTCGCGGG CAATCCCACC
GTCACTTCGA AAGACCCGGC GACGCTGGTG CATATCGCGC TGACCGGCTG GAAGACCACC
GCGACCGCCG CCCATCCGAG GGTCTGGACG ATGCCGGCCT TCGCCCGCCT CGCCGATCGC
GAGATCGCCG AGATCCTGTC CTTCGTGCGC GAGAGCTGGG GCGAAGGCGC CCGCGCCGTC
AGCGAGGCCG AGGTCGCCGC GGCGCGTGCC GCGCTCGATC CGAAGATCGA CAAGTCGCTG
TTCGAGACGC CACGTCTCGC CGATCTGCTG GCGCAGCCCA ACGCGCCGCA ACTGGTCCGC
GGCATGCGGC TCAACGCCGA AACCCGCACG CTGTTGCCGA ACCATGTCGG CGATGAACTC
AACTGCGCCT CGTGCCATCT CAACGCCGGA ACGGTCGCGG ACGGCAGCCC CTATGTCGGC
GTCTCCGCGT TCTTCCCCAG TTACGCGCCG CGCGCCGGTC GCGAGATCAC GCTGGAGGAC
CGCATCAACG GCTGCTTCCT GCGCTCGATG AACGGCAAGC CGCTGCCGGT CGACGGCCCC
GACATGCAGG CGATGGTCGC CTATTTCAAC TGGATGAAAG GCGCGACCAA GCCGTCCGAC
AAAGTGGCCG GACGCGGCGT CGGCAAGGTC GACACGACGT TGAAGCCCGA TCCGGACAAC
GGCAAGGCGA TCTACGTGGC GCAATGCGTG GCCTGCCACG GCCAGAACGG CGAAGGCCTG
AAAGACGCAG CCGGCCGGCT GGTCTATCCC CCGCTGTGGG GCGAGCACTC GTTCAACATC
GGCGCCGGCA TGGCGCGCAC CTACACCGCC GCCGCCTTCG TCAAGCGCAA CATGCCGATC
GGCACCCACG AAAAATTCCC GCTGGGACAA GGCAGTCTGA CCGATCAGGA GGCGATCGAC
GTCGCGGAGT ACTTCACCCA CATGGAGCGG CCGGACTTCG CTCCAAAGGT CAAGGACTGG
CCGAAGGGCA ACAAGCCGAA GGACGCCCGC TACTGA
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| Protein sequence | MTSNKRSLGK RLGLIAAFAV VAIGGAAAWI VQPPPIERND PGFGANVDPA LIARGEYVAR
LGDCVACHTA EGGPLMAGGR ALETPFGKVY STNVTPDPKT GIGQWSFGAF DRAMRKGVSA
DGHNLYPAMP YPSYAKMTDD DMKALWAYLL KGLAPVEKAN LPLEMQFPFN MRIALAAWNF
AFLDATPFKA EPAKDAVWNR GAYLVQGLGH CGACHTPRGI GFQEKAMSDA GPAGHFYLAG
AKVENWNAIE LRDLWTVEDT VLLLKTGQNR FATASGSMTD VILHSTQGLS DQDLTAIATY
LKALPSDRPK AEPRIASTEA PAATFTTRGG LGYAQFCTDC HRADGAGVKG IFPPLAGNPT
VTSKDPATLV HIALTGWKTT ATAAHPRVWT MPAFARLADR EIAEILSFVR ESWGEGARAV
SEAEVAAARA ALDPKIDKSL FETPRLADLL AQPNAPQLVR GMRLNAETRT LLPNHVGDEL
NCASCHLNAG TVADGSPYVG VSAFFPSYAP RAGREITLED RINGCFLRSM NGKPLPVDGP
DMQAMVAYFN WMKGATKPSD KVAGRGVGKV DTTLKPDPDN GKAIYVAQCV ACHGQNGEGL
KDAAGRLVYP PLWGEHSFNI GAGMARTYTA AAFVKRNMPI GTHEKFPLGQ GSLTDQEAID
VAEYFTHMER PDFAPKVKDW PKGNKPKDAR Y
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