| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3329 |
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| Symbol | |
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| ID | 3911131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3808239 |
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| End bp | 3809237 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637885232 |
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| Product | TRAP dicarboxylate transporter DctP subunit |
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| Protein accession | YP_486936 |
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| Protein GI | 86750440 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.330686 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTAAAT CGATATTCGT AGTTGCATCG ATCGCAGCGC TCGCGCTGGT CGGCCCGGCC
GCGGCGCAGC AGCCGATCGT CGTCAAATTC AGCCACGTGG TGGCGGACAA TACGCCGAAG
GGTCAGGCCG CGATCAAGTT CAAGGAACTG GCGGAGAAGT ACACCAACGG CAAGGTGAAG
GTCGAAGTCT ATCCGAACTC GCAACTGTTC GGCGACGCCA AGGAAATGGA AGCGGTCGCG
CTCGGCGACG TGCAGTTCAT CGCGCCGTCG CTGTCGAAGT TCGACAAGTT CACCAAGCAG
ATTCAGGTGT TCGATCTGCC GTTCCTGTTC AACGACATCG CCGCGGTCGA TCGTTTCCAG
GCCGGAAAGC AGGGGCAGGC TCTGCTGCGC TCGATGGAAT CGAAGAACTT CCTGGGCCTC
GCCTACTGGC ACAACGGCAT GAAGCAGATC TCGGCCAATA GGCCGCTGCT GAAGCCGGAA
GACGCCAAGG GTCTGAAGTT CCGCATCCAG GCGTCGGACA TTCTCGCCGC GCAGTTCCAG
GGCTTGAACG CCACCCCGCA GAAGCTCGCC TTCTCGGAAG TCTATCAGGC GCTGCAGGTC
GGCACCGTCG ACGGCCAGGA GAACACCTGG TCGAACATCT TCTCGCAGAA ATTCTACGAA
GTGCAGAAGG ACATCACCGA GTCTGATCAC GGCGTGATCG ACTACATGGT CGTGGTCAAC
GCCAAGTGGT GGAACGGCCT GTCGAAGGAT CTGCAGGACG CGATGAAGAA GGCGATGGAC
GAGGCCACCA AGGTCAACAA CGACGTCGCC GGCAAGCTCA ACGACGAGGC CAAGCAGAAG
ATCGCGTCCT CCGGCGCCAG CAAGATCCAT CAGCTGACGC CCGAGCAGCG CAAGCAGTGG
GTCGAAGCGA TGAAGCCGGT CTGGGCCAAG TTCGAAAGCG CGATCGGCAA GGACCTGATC
GACGCGGCAG TGGCGTCGAA CGACACGAAG ACCAACTGA
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| Protein sequence | MRKSIFVVAS IAALALVGPA AAQQPIVVKF SHVVADNTPK GQAAIKFKEL AEKYTNGKVK
VEVYPNSQLF GDAKEMEAVA LGDVQFIAPS LSKFDKFTKQ IQVFDLPFLF NDIAAVDRFQ
AGKQGQALLR SMESKNFLGL AYWHNGMKQI SANRPLLKPE DAKGLKFRIQ ASDILAAQFQ
GLNATPQKLA FSEVYQALQV GTVDGQENTW SNIFSQKFYE VQKDITESDH GVIDYMVVVN
AKWWNGLSKD LQDAMKKAMD EATKVNNDVA GKLNDEAKQK IASSGASKIH QLTPEQRKQW
VEAMKPVWAK FESAIGKDLI DAAVASNDTK TN
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