| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3304 |
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| Symbol | |
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| ID | 3911105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3778449 |
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| End bp | 3779639 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637885206 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_486911 |
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| Protein GI | 86750415 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGCA AATCCGCTCG AAACGTCTCG CTGGGGGCCG GCCTTGTGGC GCTCTTCGCC
GCCGTCGCCG GTGGCGCGAC GCTGATCGAC CGCTCTGGCG CGGCCGCCCG GGACACCCCG
GCGCCGCCCG CCGTGGCTGC TGCTGTGGCC ACCGTCGAGA CCAGGCCGAC CATGGCCGCC
GATGAGTTTT CGGGGCGGCT CGAAGCCGTC GAGCGGGTCG AGATCCGCTC GCGCGTCGCC
GGCGCGGTGC AGGAGATCCG ATTCCGCGAA GGCGCGCTGG TGACCAAGGG CGACCTGCTG
GTGGTGATCG ATCCGTCGCT CTACGCCGCC GACGTCGATC GCGCGCAGGC GCAGCTCTCG
TCTGCGCGCG CCCGCCTGAC GCTGGCAAAG GCCGATTTCG AGCGGGGGCA GCAGCTGTCG
AGCTCGAGCA TCACCCAGCG CGAGCTCGAC ACCCGGGCCA ACGCCTATCG CGAGGCGGAG
GCCAGCCTCA GAACCGCCGA GGCGGCGCTG AAGACCGCCG AACTCAACCT CGGCTACACC
AATATCCGCG CGCCGGTGTC CGGCCGGGTC GGCAAGGTGG AGATTACGGT GGGCAATCTG
ATCGCCGCCG GACCGAGTTC GCCGCTGCTG ACCACGCTGG TGTCGGTCGA TCCGATCTAT
GCCAGCTTCA ATGCCGACGA GCAGGTGGTG ACGCGTGCGC TGAAGACGCT GGCCGACGAG
CGTGCGCCGA CGGCGATCGA CCGCATTCCG GTGCAGATGA CGACCGGAGC GGGCGGTGCG
CCGGTGAAGG GCCGGATGCA GTTCATCGAC AATCAGGTCG ATCCGCGCTC CGGCACGATT
CGGGTGCGCG CGGTGTTCGA CAATGCCGAT GGCCGGCTGA TGCCGGGCCA ATTCGCGCGG
CTGTCGATGG GCCAGCCGAA GCCGCAGCCG GCGCTGCTGG TCAGCGAGCG CGCGGTCGGC
ACCGACCAGA ACAAGAAGTT CGTGATGGTG GTCGATGCCA GGAACCAGGC CGAATATCGC
GAAGTCACGC TCGGCGCCTC GGTGGAGGGG TTGCGCGTCG TCGCCTCCGG CCTGAAGGCC
GGCGAGCGCA TCGTGGTCAA CGGCCTGCAG CGCGTCCGCC CGGGCGTGAC CATCAAGCCG
GAGACGGTGG CGATCGACGC CGCATCCGGC AGCGCGGTGG CGCAGAACTA A
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| Protein sequence | MASKSARNVS LGAGLVALFA AVAGGATLID RSGAAARDTP APPAVAAAVA TVETRPTMAA
DEFSGRLEAV ERVEIRSRVA GAVQEIRFRE GALVTKGDLL VVIDPSLYAA DVDRAQAQLS
SARARLTLAK ADFERGQQLS SSSITQRELD TRANAYREAE ASLRTAEAAL KTAELNLGYT
NIRAPVSGRV GKVEITVGNL IAAGPSSPLL TTLVSVDPIY ASFNADEQVV TRALKTLADE
RAPTAIDRIP VQMTTGAGGA PVKGRMQFID NQVDPRSGTI RVRAVFDNAD GRLMPGQFAR
LSMGQPKPQP ALLVSERAVG TDQNKKFVMV VDARNQAEYR EVTLGASVEG LRVVASGLKA
GERIVVNGLQ RVRPGVTIKP ETVAIDAASG SAVAQN
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