| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3303 |
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| Symbol | |
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| ID | 3911104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3775085 |
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| End bp | 3778321 |
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| Gene Length | 3237 bp |
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| Protein Length | 1078 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637885205 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_486910 |
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| Protein GI | 86750414 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.110746 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.948069 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTTT CCAAGTTCTT CATCGATCGC CCGATCTTCG CCGGCGTCTT GTCGGCCCTG
ATCTTCCTCG CCGGCCTGCT GTCGCTGCCG GTGCTGCCGA TCTCCGAATA TCCCGAAGTC
GCGCCGCCCA CCATCGTGGT GACCGCCAAC TATCCGGGTG CCAATCCCAA GGTGATCGCC
GAAACGGTGT CGACGCCGAT CGAGGAGCAG ATCAACGGCG TCGAGAACAT GCTTTACATG
AGCAGCCAGG CGACCACCGA CGGCCGGATG ACGCTCAACG TCACGTTCCG CCTCGGCACC
GATCCTGACA AGGCGCAGCA GCTGGTGCAG AACCGCGTCT CGCAGGCCGA GCCGCGGTTG
CCGGCGGAAG TCCGCGCGCT CGGCGTCACC ACCATCAAGA GCGCGCCCGA TTTGACCATG
GTCGTGCATC TGATGTCACC GAACGACCGC TACGACATGA CTTACTTGCG CAACTACGCG
GTGCTCAACG TCAAGGACCG GCTGGCGCGG ATCGAGGGCG TCGGCCAGGT GCAGCTGTTC
GGCTCCGGCG ACTACTCGAT GCGGGTCTGG CTCGATCCGC AGAAGGTCGC CGAGCGCGGG
CTGTCGCCGA GCGACGTCGT GGCCGAGATC CGCGCCCAGA ACGTGCAGGC GGCGGCCGGG
CAGGTCGGCA GCTCGCCGAG CCAGCCGGGG CTCGATCTGC AGTTGTCGAT CAACGCCCAG
GGGCGGCTGC AGACCGAAGA GGAGTTCGGC GACATCATCG TCAAGAACGG CGACAACGGC
GAAGTGGTAC GGCTGCGCGA CGTCGCGCGG ATCGAACTCG GCGCCGCCGA CTACGCGCTG
CGTTCGCTGC TCAACAACAA ATCCGCGGTC GCGATTCCGA TCTTCCAGTC GCCGGGCTCG
AACGCGATCC AGATTTCCGA CAATGTCCGC GCGACGATGA AGGAACTGCA GCAGAACATG
CCGGACGGCG TCGCCTACGA CATCGTCTAC GATCCGACGC AATTCGTCCG CGCCTCGATC
GAGGCGGTGA TCCACACGCT GCTCGAAGCC ATCGCGCTGG TGGTGCTGGT GGTGATCCTG
TTCCTGCAGA CCTGGCGCGC CTCGATCATT CCGCTGATCG CGGTCCCGGT CTCCGTGATC
GGCACCTTCG CGGTGATGCA CGTGTTCGGA TTCTCGATCA ATGCGCTGAC CCTGTTCGGG
CTGGTGCTGG CGATCGGCAT CGTGGTCGAC GACGCCATCG TCGTGGTCGA GAATGTCGAA
CGCAACATCG AGCGCGGGCT GACCCCGAAG GACGCCGCCT ATCAGGCGAT GCGCGAAGTC
ACGGGGCCGA TCATCGCGAT CGCGCTGGTG CTGGTCGCGG TGTTCGTGCC GCTGGCCTTC
ATCACCGGCC TGACCGGGCA GTTCTACAAG CAGTTTGCCC TGACGGTGGC GATCTCGACG
GTGATCTCGG CGTTCAACTC GCTGACGCTG TCGCCGGCGC TCGCCGCGCT GCTGCTGAAG
GGCCACGACG CGCCGAAGGA TGTGCTGACG CGGTTCATGG ACAGGACGCT CGGCTGGTTC
TTCGTCCGCT TCAACCGGTT TTTCGCGCGG AGTTCGGAGG CCTATGGCGG TGGCGTCAGG
CGGGTGATCT CGCGTCGCGC GATCGGCATG GCGGTGTATC TGCTGCTGGT CGGCGTCACC
GGGTATCTGT TCCACGCGGT GCCGGGCGGC TTCGTGCCGG GCCAGGACAA GCAATATCTG
GTCGGCTTCG CGCAATTGCC GGACGGCGCC ACGCTCGACC GCACCGAAGA GGTGATCCGG
CGGATGGGCG AGATCGCCCA GCAGGAGCCG GGGGTCGAGA ACTCGATCCA GTTTCCCGGC
CTGTCGATCA ACGGCTTCAC CAACTCGTCG AACTCCGGCA TCGTCTTCAT CGGCCTGAAG
GATTTTGCGG ACCGCAAGGA CAAGTCGCTC AGCGGCAACG CGATCGCATT GTCGCTGAAC
AAGAAGTTCG CCGGCATCCA GGACGCCTTC ATCGCCATGT TCCCACCGCC GCCGGTCGCC
GGTCTCGGCA CCATCGGCGG CTTCAAACTG CAGATCGAGG ACCGTGCCGG TCTCGGCTAC
GAGGCGCTGA ACGACGCCAC CCAGGCGTTC GTCAAGAAGG CCTCGGCGCA GAAGGAGCTG
GCCGGGCTGT TCACCAGCTA CCAGATCAAC GTGCCGCAGC TCTATGCCGA CGTCGATCGC
ACCAAGGCGC GGCAGCTCAA CGTGCCGGTG ACATCGGTGT TCGACACCAT GCAGATCTAT
CTCGGCTCGC TCTACGTCAA CGACTTCAAC AAATTCGGCC GCACCTATTC GGTGCGGGTG
CAGGCCGACG CCAAATATCG GGCGCGCGCC GACGACATCG GCCAGCTCAA GGTGCGCTCC
GACAGCAACG AGATGATTCC GCTGTCGACG CTGCTGCGCG TCAAGGAGAG CGCCGGGCCG
GAGCGGGCGA TGCGCTACAA CGGCTTTCTC ACCGCCGATC TCAACGGCGG CGCGGCGCCG
GGCTATTCGA CCGGGCAGGC GCAGGACGCG ATCGCGCGCG TCGCCAAGGA GACGTTCCCG
AAAGGCATCT CCTATGAATG GACCGAGCTG ACCTATCAGG AGATCATCGC CGGAAACTCG
TCGCTGATCG TGTTTCCGGT GGCGCTGTTG CTGGTGTTCC TCGTGCTCGC CGCGCAATAC
GAGAGCCTGA CGCTGCCGCT GTCGATCATC ATGATCGTGC CGATGGGGCT GCTGGCCGCG
ATGTTCGGCG TCTGGATCAG CAAGGGCGAC AACAACGTCT TCACCCAGAT CGGGTTGATC
GTGCTGGTCG GACTGTCGGC CAAGAACGCG ATCCTGATCG TGGAGTTCGC GCGCGAACTG
GAATTCGCCG GGCGAACGCC GGTGCGGGCG GCGATCGAGG CCAGCCGGCT GCGGCTGCGT
CCGATCCTGA TGACGTCGAT GGCGTTCATC ATGGGCGTCG TGCCGCTGGT GACGTCGTCG
GGCGCGGGCT CCGAGATGCG GCACGCGATG GGCGTCGCGG TGTTCGCAGG CATGATCGGT
GTCACCGCCT TCGGCATCTT CTTCACGCCG ATGTTCTACG TGGCTCTGCG CGCGCTGGCC
GGCAACCGCC CGCTGACGCA GCACGATGAG GCGACCATCG ATCCCGTCGC GCCGAGCGCC
CAGGGATCGC GCGACTCCGC GCCCGGCGCG CATCCGGCGC CGGTCAAGCC TTCCTGA
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| Protein sequence | MNFSKFFIDR PIFAGVLSAL IFLAGLLSLP VLPISEYPEV APPTIVVTAN YPGANPKVIA
ETVSTPIEEQ INGVENMLYM SSQATTDGRM TLNVTFRLGT DPDKAQQLVQ NRVSQAEPRL
PAEVRALGVT TIKSAPDLTM VVHLMSPNDR YDMTYLRNYA VLNVKDRLAR IEGVGQVQLF
GSGDYSMRVW LDPQKVAERG LSPSDVVAEI RAQNVQAAAG QVGSSPSQPG LDLQLSINAQ
GRLQTEEEFG DIIVKNGDNG EVVRLRDVAR IELGAADYAL RSLLNNKSAV AIPIFQSPGS
NAIQISDNVR ATMKELQQNM PDGVAYDIVY DPTQFVRASI EAVIHTLLEA IALVVLVVIL
FLQTWRASII PLIAVPVSVI GTFAVMHVFG FSINALTLFG LVLAIGIVVD DAIVVVENVE
RNIERGLTPK DAAYQAMREV TGPIIAIALV LVAVFVPLAF ITGLTGQFYK QFALTVAIST
VISAFNSLTL SPALAALLLK GHDAPKDVLT RFMDRTLGWF FVRFNRFFAR SSEAYGGGVR
RVISRRAIGM AVYLLLVGVT GYLFHAVPGG FVPGQDKQYL VGFAQLPDGA TLDRTEEVIR
RMGEIAQQEP GVENSIQFPG LSINGFTNSS NSGIVFIGLK DFADRKDKSL SGNAIALSLN
KKFAGIQDAF IAMFPPPPVA GLGTIGGFKL QIEDRAGLGY EALNDATQAF VKKASAQKEL
AGLFTSYQIN VPQLYADVDR TKARQLNVPV TSVFDTMQIY LGSLYVNDFN KFGRTYSVRV
QADAKYRARA DDIGQLKVRS DSNEMIPLST LLRVKESAGP ERAMRYNGFL TADLNGGAAP
GYSTGQAQDA IARVAKETFP KGISYEWTEL TYQEIIAGNS SLIVFPVALL LVFLVLAAQY
ESLTLPLSII MIVPMGLLAA MFGVWISKGD NNVFTQIGLI VLVGLSAKNA ILIVEFAREL
EFAGRTPVRA AIEASRLRLR PILMTSMAFI MGVVPLVTSS GAGSEMRHAM GVAVFAGMIG
VTAFGIFFTP MFYVALRALA GNRPLTQHDE ATIDPVAPSA QGSRDSAPGA HPAPVKPS
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