| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3298 |
|---|
| Symbol | |
|---|
| ID | 3911099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 3767656 |
|---|
| End bp | 3769320 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637885200 |
|---|
| Product | alpha subunit of malonate decarboxylase |
|---|
| Protein accession | YP_486905 |
|---|
| Protein GI | 86750409 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4670] Acyl CoA:acetate/3-ketoacid CoA transferase |
|---|
| TIGRFAM ID | [TIGR01110] malonate decarboxylase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.217878 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCG AACGCAAATG GGACACGCTG GCATCGGATA CACGCCAGCG AATGGAGGCC
GCGGCGCGCT ACATCGGCCC CGGCAAGCAG GTGAAGAAGG AAGACACCGT CGCGCTGCTG
AAGTCGGTGA TCCGCTCCTT CGATCGCGTC AACATCGAGG GCAACAATCA GAAGCAGGCG
GATTTCCTCG CCGACTGTCT GCTGCAGGTC GATCCGGCCG AGATCAACAA TCTGCACATG
GTGCAGTCCT GCGTGCCGCT GGCCTCGCAT CTGGACATGT TCGAGAAGGG GATCGCCAAG
CGTCTGGACT TCGCGTTCGG AGGGCCGCAG GCCGCGCGGG TCGCCAAGTT CATCCGCGAG
GGCAAGATCG AGCTGGGCGC AATTCACACC TATCTCGAAC TGTTCGGCCG CTACTTCCTC
GATCTGACGC CGCGGGTGTC GCTGATCTGC GCCTACGAGG CCGATCGTGA GGGCAATCTC
TACACCGGCT TCAACACCGA AGACACGCCG GTGATCGTCG AGGCGACCAA GTTCCGCCAG
GGCATCGTGA TCGCCCAGGT CAACAAGATC GTCGACAAGC TGCCGCGCGT CGATATTCCG
GCCGGCTGGG TCGACGCCGT CATCGAGAGC CCGAAGCCGT TCTTCATCGA GCCGCTGTTC
ACGCGCGATC CGGGGCTGGT GACCGACAAC CACATTCTGC TGGCCATGAT GGCGCTGAAG
GGCATCTACG GCGAGTACAA GGTCAAGCGC CTCAACCACG GCATCGGCTT TCTCACCTCG
GCGATCGAAC TGATTCTGCC GACCTATGGT GAGGAACTTG GGCTGAAGGG GGAATGCTGC
ACCCACATGG TGCTGAACCC GCACCCGACC ATGATCCCCG CGATCGAGGC CGGCTGGGTC
GACACCATTC ACTGCTTCGG CGGTGAGCTC GGCATGGAAG AGTACGTCCG CGCCCGCTCC
GACGTGTTCT TCACCGGCCC CGACGGATCT CTGCGTTCCA ACCGCGCTTT CGCGCAGACC
GCCGGTCACT ACGCGCTCGA CATGTTCATC GGCGGCACGC TGCAGATCGA CAAGTTCGGC
AACTCCTCGA CGGCCACGGC CAACCGCGTC GCCGGCTTCG GCGGAGCGCC GAACATGGGC
TGCGACTCCA AAGGTCGTCG TCACGTCACC GACAGCTGGC TGAAGTGCGG CCAGGAAGTG
CCGAACATGC ACGACCTGAT CGGCGACATG CCGCGCGGCA AGCGCCTGGT GGTGCAGGGG
GTGGAGACCT TCGGTGAAGC CCGCGCGCCG AGCTTCGTCG ACAAGCTCGA CGCCTGGAAG
CTGGCCGAGA ACGCCAAGCT CGATCTGCCG CCGGTGATGA TCTACGGCGA CGACGTCACC
CACATCATCA CCGAAGACGG CATCGCGTAC CTGAACCGCG CGCCGAACAT GGACGTCCGC
ATGGCCGCGA TCCGTGCCGT CGCCGGCTAC ACCGAGATCG GCCTCGCGGA AGACCCGGCG
GAAACCAAGA GGCTGCGCGA AGCCAAGATC TTCCAGACGC CGGAAGACCT CGGCATCGAT
CGTTCGCGCG CCAACCGCGA CCTCTTGGCC GCGCGCTCGA TGCGCGACCT CGTCGACATT
TCCGGTGGGC TCTACAACCC GCCGACTCGT TTCCGCAACT GGTGA
|
|---|
| Protein sequence | MKTERKWDTL ASDTRQRMEA AARYIGPGKQ VKKEDTVALL KSVIRSFDRV NIEGNNQKQA
DFLADCLLQV DPAEINNLHM VQSCVPLASH LDMFEKGIAK RLDFAFGGPQ AARVAKFIRE
GKIELGAIHT YLELFGRYFL DLTPRVSLIC AYEADREGNL YTGFNTEDTP VIVEATKFRQ
GIVIAQVNKI VDKLPRVDIP AGWVDAVIES PKPFFIEPLF TRDPGLVTDN HILLAMMALK
GIYGEYKVKR LNHGIGFLTS AIELILPTYG EELGLKGECC THMVLNPHPT MIPAIEAGWV
DTIHCFGGEL GMEEYVRARS DVFFTGPDGS LRSNRAFAQT AGHYALDMFI GGTLQIDKFG
NSSTATANRV AGFGGAPNMG CDSKGRRHVT DSWLKCGQEV PNMHDLIGDM PRGKRLVVQG
VETFGEARAP SFVDKLDAWK LAENAKLDLP PVMIYGDDVT HIITEDGIAY LNRAPNMDVR
MAAIRAVAGY TEIGLAEDPA ETKRLREAKI FQTPEDLGID RSRANRDLLA ARSMRDLVDI
SGGLYNPPTR FRNW
|
|---|
| |