Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3272 |
Symbol | |
ID | 3911073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 3742995 |
End bp | 3745247 |
Gene Length | 2253 bp |
Protein Length | 750 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637885174 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_486879 |
Protein GI | 86750383 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.46801 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.424622 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGCTCT ATCGCGATAC AATTGTTCTT GCGGCTCTCA CCGCCGCTTC GATGTGCGTG CCGGAGGCGA TGGCGCAGCC GTCTTCGCAG GCGGAGTCGG TTGCGCTTCC GGCCGTGACG GTGAGCCCGG CACAGCGCGC TTCGAGCCGG TCCGCTCCGC GTCGTCGCGC AGCAAAGCCG GTACCGGCGC CGAGGACCGC GCCGGTCGCG CCCCGCGCGG TCACCAGCGT CAGCAACACG TCGGATCGCT ATCTCGACCG GCGTTCGACC GCAGCGACGA AGACCGACAC GCCCGTGCTG GAGACGCCGC AGTCGATCTC GACGATCACA CGCCGGCAGA TGGACGATCA GAACGCCCAG ACGGTCGGCA ATGCCCTTCG CTATACGGCG GGTGTCCTCT CTGATGCCGA TTCCAATGCG CGCTACGACA GCATCTTCAT TCGCGGCTTC GGCGCGTTCG GCACCGCGAC CAACTACGTC AGTTTCCTCG ACGGTCTGAA GCTGCCGCGC GGCCAGGCCT TCGCCAACAC GTCGATCGAC CCGTTCCTGC TCGACCGCGT CGAGGTGTTG AAGGGGCCCT CGGCGGTTCT CTACGGCCAG ACCAGCCCCG GCGGCCTCGT CAACCAGGTC AGCCGGCTGC CCAGCGCCGT GCCCTACAAC GAAGTCAGGA TCGAGGGCGG CACCTACGGC CGCATCCAGT CGGGGGTCAC CAGCCAGGGC GCCCTGGATA AAGACGGGCA CTGGCTCTAC AGCCTGAGCG CCATCGGCCG CTCGTCCGGC ACGCGCTACG ACGGCGTCGA CGAACAGCGC TACGCCGTCG CGCCCGCCGT CACCTGGACG CCGGACGCCG ACACCAGCTT GACGGTGCAG AGCTACTATC AGCGCGATCC GAAGGGCGGC TATTTCAATT CGCTGTATGC CAGATCGCTG GCGCCGGCGC AGTACCAGTC GTTCCTGAAC TCCAAGCTGA ATGTCGGTGA CCCGAGCTTC GATGCGTTCC AGCGCGAGCA ATACGGCATC GGTTATCAGT TCGACAAACG CCTCAACAGC GTCGTCAGCG TTCGGTCGAG CCTGCGCTAT TCGCACGTCG ATATCGATAT GCAGTCGCTG CAGATGAACG CGCCGCTCAC GGCGACCGGC CAGTTGCCGC GCTGGGCGGT GCGCTCCATC GAGAATGTCG GCGGATTGTC GACCGATAAC CGGGTGCAGT TCGACCTCTC CACCGGCGCA CTTCAGCACA AGATCATCAC CGGCGCCGAC TATCAGCAAT CCCGGAGCGA CTGGGTCTAT CAACTCGGCG CGGCGACGTC CCTGAACGTG ATCAATCCGG TCTACGGCCA GACGGTCGGA ACGCTCACGT CGCTGATCAA CAGCGGGCAG GACCTGTCCC AGACCGGTCT GTACGCGCAG GATCAGATCA GCCTCGGTCA ATGGCGCGCG ACCCTCGGCG CCCGCCACGA CTGGACCGAG CAGAGCACGG ACAACCGCCT CGCAGGCTCC GGCACCAGCC AATCCGCCGA CAAGACGACG TACCGCGCCG GTCTGCTGTA TCTCTTCGAC AATGGTGTCG CGCCCTATGT CAGCTACTCG ACCTCGTTCG AGCCGGTGGC CGGCGTCGGT GTCGACGGTT CGCCGTTCAT CCCGACGACG GCGGAGCAAT ATGAAGGTGG CATCAAGTAT CAGCCGAATG CCCTGCCGAT CCTGCTGACG GCATCGGTCT TCGATATCCG GCAGCAGAAC GTGCTGACGC CGTCCGCCGT TGCGGGCTTT AACGTCCAGC AGGGTGAAGT TCGGTCGACC GGGGTCGAAT TGGAGGCGCG CGGCAACGTC ACAGACGGCC TCGAATTGAT CGGCGCCGTG ACGTTCCTCG ACACGCGCGT CACGCAGTCG ACGACCACGT CGATCATCGG CAATCGGCCG CAAGCGGTGC CCGACTTCTT CGGCTCTGTC TGGGCAAATT ACACTTTCCG GTCCGGTCCC GTGGGCGGAT TGTCGGTCGG TGGCGGCATC CGGCATGTCG GCGCGAGTTA CGGCGACGAC GCCAACACGC TGCAGACGTC GGCCTACACC CTCGTGGATG CGGCGCTGAA GTATGAGCTC GAGTATCTCT CGCCCCGCCT GAAAGGCACG GCCTTGACGC TCAACGTCAA CAATCTGTTC GACAAGGAGT ACTATTCGAG CTGTTCGTCG ACTTACTACT GCCAGTTCGG CAACCGCCGA ACGATCCTGG CCGGGCTCCG GTATCGATGG TGA
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Protein sequence | MGLYRDTIVL AALTAASMCV PEAMAQPSSQ AESVALPAVT VSPAQRASSR SAPRRRAAKP VPAPRTAPVA PRAVTSVSNT SDRYLDRRST AATKTDTPVL ETPQSISTIT RRQMDDQNAQ TVGNALRYTA GVLSDADSNA RYDSIFIRGF GAFGTATNYV SFLDGLKLPR GQAFANTSID PFLLDRVEVL KGPSAVLYGQ TSPGGLVNQV SRLPSAVPYN EVRIEGGTYG RIQSGVTSQG ALDKDGHWLY SLSAIGRSSG TRYDGVDEQR YAVAPAVTWT PDADTSLTVQ SYYQRDPKGG YFNSLYARSL APAQYQSFLN SKLNVGDPSF DAFQREQYGI GYQFDKRLNS VVSVRSSLRY SHVDIDMQSL QMNAPLTATG QLPRWAVRSI ENVGGLSTDN RVQFDLSTGA LQHKIITGAD YQQSRSDWVY QLGAATSLNV INPVYGQTVG TLTSLINSGQ DLSQTGLYAQ DQISLGQWRA TLGARHDWTE QSTDNRLAGS GTSQSADKTT YRAGLLYLFD NGVAPYVSYS TSFEPVAGVG VDGSPFIPTT AEQYEGGIKY QPNALPILLT ASVFDIRQQN VLTPSAVAGF NVQQGEVRST GVELEARGNV TDGLELIGAV TFLDTRVTQS TTTSIIGNRP QAVPDFFGSV WANYTFRSGP VGGLSVGGGI RHVGASYGDD ANTLQTSAYT LVDAALKYEL EYLSPRLKGT ALTLNVNNLF DKEYYSSCSS TYYCQFGNRR TILAGLRYRW
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