Gene RPB_3256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3256 
Symbol 
ID3911057 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp3722952 
End bp3724214 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content65% 
IMG OID637885158 
Productbeta-lactamase 
Protein accessionYP_486863 
Protein GI86750367 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.748817 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGCCC ACCCCCAAAA GTCACGCGCT CCCGCGACCG GTTCTGCTGC CGATGCGGGC 
ATGTCCGAAC CCGCGCTGAA CCGGATCGAC GATCATCTGA AGCGGGTCTA TATCGACCCC
GGCAAGTTCG CCGGCACCCA GACGCTGGTC TATCGCCGCG GCCGGATCGT CCACCAATCG
TCACTTGGCC ACGCCGACCG CGAACGCCAG GTGCCGATCA AGGACGACAC AATCTTCCGC
ATCTATTCGA TGACCAAGCC GATCACCTCG GTGGCGCTGA TGATGCTGTT CGAGGAAGGG
CGGATCGCAC TCGACGATGC GGTGGCGAAG TACATTCCGG AATGGGCCGA TCTCGGCGTG
TTTCAGGCCG GCATCGGGCC GCTGTTTCTG ACGAAGCCGC CGGCGCGCCC GATGCAGATC
GTCGATCTGC TGCGGCACAC CTCCGGCCTG ACTTACGGCT TCCAGAATCG CACCAATGTC
GACGCCGCGT ATCGCGACAA GGGCATCGGC GCGTTCGAGA AAGCCGGCAC GCTGGACTCG
TGGATAGCGG ATCTCGCCCG CATTCCGCTG GAGTTCTCCC CCGGTGAGGC CTGGAACTAC
TCGGTCTCGA CCGACGTGGT CGGCTATATC GTGCAGAAGA TCAGCGGCAT GCCGTTCGAA
CAGTTCGTCA AGCAGCGCAT TCTCGATCCG CTCGGCATGA CCGACACCGA TTTCCACGTC
CCTCCGGAGA AGGCGCACCG CCTCGCCGCC TGCTATTCCA CCGACGGCAA GGGCGGCATG
ACGCTGCAGG ACGATCCGGC GACCAGCAGT TTCCTCGCAC CGCCCGACCT GATCTCGGGC
GGCGGCGGGC TGCTCTCGAC CTCTGCCGAC TATCTGAGAT TCTGCCGGGC GCTCTTGAAC
GGCGGCGAAC TCGACGGCGT CCGCCTGATC GGGCCGAAAA CGCTGGCGCT GATGACCACC
AACCACCTGC CCGGCAATCG CGACCTCACC GAAATGTCGC GCTCGATGTT CAGCGAGGCG
ACCAACGCCG GTATCGGCTT CGGTCTCGGC TTCGCGGTGA ACATGAACCC GGCCCTGACG
CTGCTGCCCG GCAGCGCCGG CGAGTATTAT TGGGGCGGCG CCGCCTCAAC CGCGTTCTGG
ATCGACCCGG CGGAGGAGCT GATCGCCATC TTCATGACGC AGTTGCTGCC GTCGAGCAGC
TATCCGATCC GCCGCGAACT GCGGGCGCTG GTCTACGGCG CGATCACCGA AAGCAATCTC
TGA
 
Protein sequence
MPAHPQKSRA PATGSAADAG MSEPALNRID DHLKRVYIDP GKFAGTQTLV YRRGRIVHQS 
SLGHADRERQ VPIKDDTIFR IYSMTKPITS VALMMLFEEG RIALDDAVAK YIPEWADLGV
FQAGIGPLFL TKPPARPMQI VDLLRHTSGL TYGFQNRTNV DAAYRDKGIG AFEKAGTLDS
WIADLARIPL EFSPGEAWNY SVSTDVVGYI VQKISGMPFE QFVKQRILDP LGMTDTDFHV
PPEKAHRLAA CYSTDGKGGM TLQDDPATSS FLAPPDLISG GGGLLSTSAD YLRFCRALLN
GGELDGVRLI GPKTLALMTT NHLPGNRDLT EMSRSMFSEA TNAGIGFGLG FAVNMNPALT
LLPGSAGEYY WGGAASTAFW IDPAEELIAI FMTQLLPSSS YPIRRELRAL VYGAITESNL