| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3250 |
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| Symbol | |
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| ID | 3911051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3714504 |
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| End bp | 3716525 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637885152 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_486857 |
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| Protein GI | 86750361 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCAAT TCTTCCACGC ATGGGATGGC CAACATGCAG GGCTCGTTGG TCTCGGGCTC
GCGCTGTGTC TGTTGGGCGC CATGGCTGCG GCCGGAGCGC TGCGCTTCAC CCGGATCAGT
TCGGGGCGGG TGCGTAGAGG CTGGGTGATC GCGGCGTGCG TCGCGGCGGG CTGCTGCCTT
GCAAGCGCCC TGACCGTTGG GCTGCTGTTG GCCGTTCCCT CCGAGCCAGT TGTTCGCGAT
GTCGCGCTGG CGATCGTCAT CGTGACGATC CTCGGGATGA CGGTGACCGT CGCCATGGCC
GTGTGGTCCG GCGCGAAGGG GACTAACAAC GTCCGCAGCG CCCTTGCCGA ACGCGTCATG
GTGCTCGACG CCATAGTGCA GAAAGACTCG CACGGTTTTT GCCTGTTCAG TCCCGATGGG
CGGCTGGAGG CGTGGAACGA GGCCTTTCTC GACATCTATG CCATCCCTCC CGGCCAGCCG
CTCGCCGGCG CCACGCTGGC CGAACTGGTC GAGATCCTCC GCGTCTGCGG CAATCAGCTC
ACGGATATCG AACAACTGTC GGAGATCAAA GCCGCGAGCG CCGGCGGTGG ACCATCCGAA
ATAGTCGTCG AGCTAAGCGA TGGCCGCCAT ATCAGGCTCG AATTTCGGCC GTTGCCGAAC
GGCGGCTGGA TCGCCAAGCA GGCCGACGTC ACCGACTACA AGATGGCCGA ACAGCGTTTC
GCCTATGTCA CGCTGCACGA TATCGCCACC GGTCTCCCCA ATCGCGCGGC ATTCAATCAG
CGGATCGGGC AGAGTCTGGC GGTCGCCCGC GAGCGGCACG CGAGTTTCGC TGTGATCCGG
CTCGGAATCG ACCGGTTCAA GGAGATCAAC GATGTCTTCG GCCAGTCGGT CGGCGACGCC
GTGCTCGCCA AGATGGCGGC GCTGCTGACC GAGACATGCC ACTGGGGCTT TCTGGCGCGG
CCGGGTGGTG ACGAGTTCTC GATCGTGACG CAACCGGATC AGGCCGCCGA TGCCTTGCAG
GAGATCTGCA GCCAGGTCTT GCGACTTTGC GACGTCGAGT TCGACATCGA TGGCCATGCG
ATCCGGGTCG GGTCGACCGC GGGCGTCAGC ATCTATCCCC GCGACGGCGA CGACGCGGAG
ACCCTGATCG CGCATGCCGA CGTCGCGCTG TATCGAGCGA AGAACGAACG GCGCGGCAGC
GTCTGCGTGT TCGAGCCGGC GATGGACCTG CAGATTCGCG AGAAGCGCGC CTTGCAGCGC
GAACTTGCAT TGGCGTTGCA GAACGACGAG TTCGAGCTTC ACTACCAGCC CCAGGCGACC
ACCAAGGGCG AGATCGTCGG CTTCGAGGCG CTGCTGCGCT GGCGCCATCC GGTCCGCGGC
ATGGTGTCGC CCGCGGCCTT CATTCCGCTC GCGGAAGAAA CCGGGCTGAT CGGAGCGATC
GACGAATGGG TGCTCCGCAG CGCCTGCCGC GAAGCCGCCT CCTGGCCGAA ACCGCTGGCC
ATCGCGGTCA ACCTCTCGCC GCTCGATTTC GGGCGGCTCG ATGTGCCGGC GTTGATCCTG
CAGGTGCTGC TCGAAACCGG CCTCGACCCG AAGCGACTCG AGGTCGAGAT TACCGAGGGC
GTGCTGATCG ACGACTTCAG TGGCGCCATC GGGATCCTCC GGCGGATCAA GAATTGCGGC
GTTCGCGTCG CGATGGACGA TTTCGGGGCC GGCTATTCGT CGCTGTCTTA TCTGCAGTCG
TTTCCGTTCG ACAAGATCAA GATCGATCAA GCATTCACGC GCAAACTCGA GATCAACCCC
GATTCCGCGG CGATCGTCGA GGCGATCCTG AGCCTCGCGC ATCGTCTGAA TCTGCCGGTG
ATTGCCGAAG GCGTCGAGAC CGAGAGCCAA CTGGCATTTC TGGCCAGCGT CGGCTGCGGC
GAGGTGCAGG GCTATCTGAT CGGCAAACCT GGCCCGATTG CGCAATATCG TCATCTGACG
GGCGGCGCCA CGCCCGAGCC GCAGCTCGCT CAGGCCGGCT GA
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| Protein sequence | MLQFFHAWDG QHAGLVGLGL ALCLLGAMAA AGALRFTRIS SGRVRRGWVI AACVAAGCCL
ASALTVGLLL AVPSEPVVRD VALAIVIVTI LGMTVTVAMA VWSGAKGTNN VRSALAERVM
VLDAIVQKDS HGFCLFSPDG RLEAWNEAFL DIYAIPPGQP LAGATLAELV EILRVCGNQL
TDIEQLSEIK AASAGGGPSE IVVELSDGRH IRLEFRPLPN GGWIAKQADV TDYKMAEQRF
AYVTLHDIAT GLPNRAAFNQ RIGQSLAVAR ERHASFAVIR LGIDRFKEIN DVFGQSVGDA
VLAKMAALLT ETCHWGFLAR PGGDEFSIVT QPDQAADALQ EICSQVLRLC DVEFDIDGHA
IRVGSTAGVS IYPRDGDDAE TLIAHADVAL YRAKNERRGS VCVFEPAMDL QIREKRALQR
ELALALQNDE FELHYQPQAT TKGEIVGFEA LLRWRHPVRG MVSPAAFIPL AEETGLIGAI
DEWVLRSACR EAASWPKPLA IAVNLSPLDF GRLDVPALIL QVLLETGLDP KRLEVEITEG
VLIDDFSGAI GILRRIKNCG VRVAMDDFGA GYSSLSYLQS FPFDKIKIDQ AFTRKLEINP
DSAAIVEAIL SLAHRLNLPV IAEGVETESQ LAFLASVGCG EVQGYLIGKP GPIAQYRHLT
GGATPEPQLA QAG
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