| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3248 |
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| Symbol | |
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| ID | 3911049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3711024 |
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| End bp | 3712286 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637885150 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_486855 |
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| Protein GI | 86750359 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCGGC GGGCTGCAAT GATGATCGAT TATCTCCACA GCCGCGTAGC CGCCGCGCGC
CGCGTGATGT CGTCCACCGC CGGATTGATC GGATCCGACT ACACGTCGGA AGAGCAGGCG
TGGGAAATGC TGGAGGGGCT GTTCAGCCCG TTCGCCCATG CCCTGACGGC GACGGCGATC
GCGATCACCG CGTGGTACAA TTGGCATTCC CACAATTCGC TGGCGTCGTT TGCGGCGGTT
GCTGTCGTCG GGCCGACATT GTCGTTGCGG CTTCTTCTGG CGCAGCGCTT CCGCACGCGC
GGACCCGACG CGCGGGTCTC GAAATGGGTT CGCCTGTTCG CGATCATGAG CTTCGTCGCG
GCGATTGGCT GGGGCTCCAG CCTGTCGATC CTCATCTTCA CCACCGAGGG ATTGCCGCTG
TTCGCGGTTT TCGCGTTGAT CTGCGCGCCG GTGCAGGGCG CCAGCGCGCG CGCTTATGCG
ATGCCGTCGG TCGTGATCCT CCATATCAGC ATCGTGTTGG GCCTGGTCGG CATCGCGGCG
ACGGTGTTCG GGATCGCAAT CGCCATCCCG TTCTGCCTTC TCTATTTGTG GTACCAGATC
GGCTTCGTCA TGGAGCTGGT CGCGCTGCGC CGGAAAATGC TGAAAGCCGA CCACGACCGG
CGTCAGTTGC TGACTCAGGT GACGCGCTAC AATGCGGATC TCGCATCGCT GAACACCCAG
CTTTCGGCGT TCGCGCTCAC CGATGGTCTG ACCGGCGTCG GCAACCGGCG GGATTTCGAC
GACAAGCTGC AGCGTTTCCT GACGGGCCAG ACAAACGCGA CGACACCACT GGCCCTTCTT
CTGATCGACG TCGATCGCTT CAAACGGCTC AACGACACTT ACGGGCATTT GGTCGGCGAC
CAATGCCTGA AACTGTTGGC GACCGCGATC AGATGCGTCG TGAGCAGGAG CGGAGACGTC
GTCGCACGCT ATGGCGGCGA GGAGTTCGCG GCGATCCTGC CGGCGACGGA CGCGGCAACT
GCCCTGGCGA TCGCGGAACG TATCCGGCGC GCGATTGAAA CCATGGACCT CGCCGGCCTG
CCGAAATTGG ACGAGCGGCC GACGGTGAGC ATCGGCGTCG GCATCGCCGC TTCCGGAACG
ACGATGCTGC CGCACGCGTT GATCGAAATC GCCGACGCTG CTCTGTATGC GGCCAAGCAG
AGCGGTCGCA ATTGTGTCCG ACATGGCGCC GCGACTCGCC AGCCGCTGCG CCACATCGCC
TAG
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| Protein sequence | MMRRAAMMID YLHSRVAAAR RVMSSTAGLI GSDYTSEEQA WEMLEGLFSP FAHALTATAI
AITAWYNWHS HNSLASFAAV AVVGPTLSLR LLLAQRFRTR GPDARVSKWV RLFAIMSFVA
AIGWGSSLSI LIFTTEGLPL FAVFALICAP VQGASARAYA MPSVVILHIS IVLGLVGIAA
TVFGIAIAIP FCLLYLWYQI GFVMELVALR RKMLKADHDR RQLLTQVTRY NADLASLNTQ
LSAFALTDGL TGVGNRRDFD DKLQRFLTGQ TNATTPLALL LIDVDRFKRL NDTYGHLVGD
QCLKLLATAI RCVVSRSGDV VARYGGEEFA AILPATDAAT ALAIAERIRR AIETMDLAGL
PKLDERPTVS IGVGIAASGT TMLPHALIEI ADAALYAAKQ SGRNCVRHGA ATRQPLRHIA
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