| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3230 |
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| Symbol | |
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| ID | 3911031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3691321 |
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| End bp | 3693939 |
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| Gene Length | 2619 bp |
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| Protein Length | 872 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637885132 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_486837 |
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| Protein GI | 86750341 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGTCG GAGATAGTTT GTCGGCGGAC GATCGCGACG TCCGGCTCGC CGCGCTCGAG
CGCACGAGGG ATGCCGTGGT GATCGTCGAT CACGACGGTC ACCTGCGCTA TGTCAACGCG
GCGGCGGAGT CGACGTTCGG GCTGGACCGG ACCGGGCTGC TCGGCCGGGC TGTCGGCGCG
CTCGGCCACG ACGAGTTGGG CGCACGCATC GTGCAAGCGG CGTTCGCAGC GGTCGATCCC
GATCGCCCGC TCGGCCAAGC CGGTTTCGAA ATCACCATCG GTCGCCAGGA CCGTCGTGCG
GTTCGCGCCG CGGTGTCGGT CTCGCGGGCG CAGGTCGGGA GCGGCGATTA CGCCATCGCG
TTCGTCCGGG ACATCACGCA GGAAGTCGAA CAGCGCGAGG GGATTGCGGC GCTGATGACG
GTCGCCGAAC GCGCCAGCCG CGCCGTCCTC GTCACGGATC GCGACGATAT CATCATCTAT
ACCAACCCGA GCTTCACGCG TCTGTTCGGA TACTCCGCCG AGGAGACGAA GGGCCGGCAC
GCCGGTGAAT TGCTCGCGGG CCGCCATTCG AACCGCCGGA CGATCGCGAG CCCGGCGCCC
GACATCGACG ACGAGGGCAG CGAGCAACAG ATCCTGCTCT ACGCCAAGGA CGGCGGCGAG
ATCTGGGTCT CCGCCGAGGT CAAGGGACTG CGCGACGGGC GAGGGGTCGC GTTGCTGACC
GACATCTCGG AATCCGTGCA GTTGCGGACG CTGCAGCAAC TGACGCTGAG CGCACTGGCC
GATGAAATCC CGATCACCGA GCTCGCGGAC CGGATGTGCA GGTTCGTCGA GAAGATCGCG
CCGGACGTGG TGTCCTCGCT GCAGCAGATC GAGTCCGGGT TGGTTCGCCC GCTCGGCGGC
CCGGGCCTTC CCGACGAATA CTCCCGCGCT CTGGACGGCG TCGCGATCGG TCCGGAGAAG
GGGTCTTGCG GGACCGCAGC CTATTTCGGC AATCCGGTCT TGGCGATCGA CATCGACACG
GATCCGCGCT GGCAGCCGTT CAAGGCGCTG CCGCTCGCCG CCGGTCTGCG CGCCTGCTGG
TCGTCGCCGA TCAAGGCCAA GGACGGCCGC GTGATCGGCA CCTTCGCGTT CTATTTCAGG
GAATGCCGCG CGCCCAGCCG CTGGCACGAG CGGATCGTCG ACGCTTGCGT GCATCTCGGC
GCGCTTGCGA TCGAGCGCAA GGAAGCGCGC GCCCAGATCG CGCGGCTCGC TTATTACGAC
ATGCTGACGG GCCTGCCGAA CCGCGCGCGC CTGCGCGATC TGATCGCCCA GGCGACCGGG
ACCTGTCCGC CGGGACAGCA CGTCGCGCTG GCGTTCCTCG ACGTCGACAA TTTCAAGGAC
GTCAACGACA CGCTCGGCCA TGCCGCCGGC GACGATTTCC TGGTGGCGTT CGCACAGCGT
CTGCGCGAGC AGATTCGGCC GTGCGACATG CTGGCGAGGC TCGGCGGCGA CGAGTTCGTG
ATCGTGATGC CGGGACGCAA CGCATCGGAA GCCGGGCTCG TCGCGTCGCG AATTGCCGAG
GCCCTGGCGT TGCCGCTCGG GATCGGAACC TGGCAGGTGC CGATGTCCGC CAGCATCGGC
ATCAGCCTGT ATCCGGACAA CGCCACCGAC ATCGATGTGT TGATCAGGCA GGCCGACACG
GCGATGTACC AGGCCAAGCG CAGCGGCCGT TCGACCTATC GCTTCTTCAG CGAAGACATG
AACGGCGCGG CCGAGGAACG GATGGCCTAC AGCGCGGCGT TGCGCAACGC CATCACGTTC
GATTTGCTCG AGCTGCACTA TCAGCCGCAG ATCGGGACCC GCGACGGCGC CATCCACGGC
GTCGAGGCGC TGGCGCGCTG GAACGATCCC GTGCTCGGCG CGGTGTCGCC GGCGAAGTTC
ATTCCGCTGG CCGAAGAGTG CGGGCTGATC GAACAGGTCG CGCTGTGGTC GATCCGCGCC
GCTTGCCGGC AGATGGCGGC GTGGCGCGCG CTGGGGCTCG ATATTCCTTG CGTCTCCGTC
AACCTGTCGC CGATCAATTT CCAGAATCCG AATCTGGCCG ATTTGGTGTC GGATATTCTC
GCCGAGCTCC GCCTGCCGCC GGAGGTGCTG ATGCTCGAAG TGACCGAGGG CGTGATCCAG
AACGAACGTT CGCTGGCGAT CGAGACCATG AACGCGCTGC GCAGGCTCGG TGTCGGATTG
TCGCTCGATG ATTTCGGCAC CGGCTATTCC AGTCTCAGCC AGCTTGCGCA ACTGCCGATC
CGCGAATTGA AGATCGACCG CGGCTTCATG CGCGACATCG CGCACCAGTC CAGCGCGCGG
GCGGTGGTGA CCGCGGTGGT TCGGGTCGGC CAGAGCCTGC AACTCAGCGT GATCGCCGAA
GGCGTGGAAA CCGACGAGCA ATTCGCCTTG CTGGCGGAAC TGGGATGCGA TGCCGTCCAG
GGATTCCTCT ACGCCCCGGC GCTGACGCCG GCGGCCTTCG AACTCTGGCT GGTCGACTAC
AGTGCCCGGC GAGGCGCGGC GATGTCGAAG CGCGTCGCCG GCGCGCCGAT CCCGGCATTG
CCCGAGCTTC GCGCCGCCGC CATGCGGCGG CTGGGTTAG
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| Protein sequence | MEVGDSLSAD DRDVRLAALE RTRDAVVIVD HDGHLRYVNA AAESTFGLDR TGLLGRAVGA
LGHDELGARI VQAAFAAVDP DRPLGQAGFE ITIGRQDRRA VRAAVSVSRA QVGSGDYAIA
FVRDITQEVE QREGIAALMT VAERASRAVL VTDRDDIIIY TNPSFTRLFG YSAEETKGRH
AGELLAGRHS NRRTIASPAP DIDDEGSEQQ ILLYAKDGGE IWVSAEVKGL RDGRGVALLT
DISESVQLRT LQQLTLSALA DEIPITELAD RMCRFVEKIA PDVVSSLQQI ESGLVRPLGG
PGLPDEYSRA LDGVAIGPEK GSCGTAAYFG NPVLAIDIDT DPRWQPFKAL PLAAGLRACW
SSPIKAKDGR VIGTFAFYFR ECRAPSRWHE RIVDACVHLG ALAIERKEAR AQIARLAYYD
MLTGLPNRAR LRDLIAQATG TCPPGQHVAL AFLDVDNFKD VNDTLGHAAG DDFLVAFAQR
LREQIRPCDM LARLGGDEFV IVMPGRNASE AGLVASRIAE ALALPLGIGT WQVPMSASIG
ISLYPDNATD IDVLIRQADT AMYQAKRSGR STYRFFSEDM NGAAEERMAY SAALRNAITF
DLLELHYQPQ IGTRDGAIHG VEALARWNDP VLGAVSPAKF IPLAEECGLI EQVALWSIRA
ACRQMAAWRA LGLDIPCVSV NLSPINFQNP NLADLVSDIL AELRLPPEVL MLEVTEGVIQ
NERSLAIETM NALRRLGVGL SLDDFGTGYS SLSQLAQLPI RELKIDRGFM RDIAHQSSAR
AVVTAVVRVG QSLQLSVIAE GVETDEQFAL LAELGCDAVQ GFLYAPALTP AAFELWLVDY
SARRGAAMSK RVAGAPIPAL PELRAAAMRR LG
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