Gene RPB_3087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3087 
Symbol 
ID3910888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp3518689 
End bp3519906 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content63% 
IMG OID637884992 
Productpyridoxal-5'-phosphate-dependent enzyme, beta subunit 
Protein accessionYP_486697 
Protein GI86750201 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0031] Cysteine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATTA TTCAAGTTGC GACAGCGCGA AATCTTCCCG CGGAGCCCAA GCGGGTCTTG 
GGTCTGTTCG GCGGTGAGAT CGCCGAGCAG GAGTGGGTGA GAAACGCTGT CGACATTCTC
GAAGCGGATG CGAGGCGCTC GGCCGACACG CATCTCTTCA AGCTGCGCTT TCCGGGCCTC
GACGGCATCG ACGTCTATTT CAAGGACGAG AGCACGCATC CGACCGGCAG CCTGAAGCAT
CGCATGGCGC GGTCGCTGAT CATGTTCGGA CTGTGCAATG GTTTGATCGG ACCGGGGACC
GCTCTGGTGG AGGCGTCATC GGGGTCGACG GCCGTATCGG AAGCATACTT CGCCGAGCTG
CTCGGCCTGC CCTTTATCGC CGTGGTGCCG CGTTCAACGT CGCGCCAGAA GGTCACGGCG
ATCGAACGGT TCGGCGGCCG ATGCCACTTT GTCGACAGGT CGTCGGAGGT TTACGGCGCG
GCCCAGATGA TCGCCGCCGA TCTCGGTGGT CTGTATCTCG ACCAGTTCAC CTATGCCGAG
CGCGCGATCG ACTGGCGCAC CGGCAATATC GCCGAGAGCA TCTTCAAGCA GATGGCCGGC
GAGCGTCACC CGGTGCCCGA ATGGATCGTG ATGAGCACCG GCACGGGCGG CACTTCTGCG
ACGATCGGCC GCTACATTCG ATTCAGCAGA CAGAAGACGC GGCTCTGCGG AGTCGACGTC
GAGAACTCCT GCTTCTTCGA AGCCTATAAG TCGAGCAGCC GCACCGCCAA TTGCATCCGT
GGCTCGCGCA TCGAGGGCGT CGGACGTCCG CGCGTCGAGC CGTCCTTCGT GCCCTCCGTG
ATCGATCAGA TGATGCGAGT CCCCGATGCC GCGTCGATCG CTGCGACGCG GGTGCTGACG
TCGCGGCTGT CGCATCGGGT CGGCGGATCG ACCGGCGCCA ACTTCATCGG ATTGTGCTGG
TGCGCGGCCG CGATGCTGCG TGAGGGGCTT TCTGGATCGC TGGTGACTGT TCTGTGCGAC
GACGGCGAGC GTTATTCGGA CACGTACTAC AACGACGACT GGTTGAAAGA GCAGGACATC
GTCATTGCGC CCTATGTCGC GGCGATCGAG CGGTTTCTCG ACTCCGGCGT GTTCGAGATG
CCGGCTGATG GCGCGGGATT TGAATGTGCG AGCCGGCCGA CCCCACGCGC GCGCAATGCG
AGCGAAGACG GCGTGTGA
 
Protein sequence
MTIIQVATAR NLPAEPKRVL GLFGGEIAEQ EWVRNAVDIL EADARRSADT HLFKLRFPGL 
DGIDVYFKDE STHPTGSLKH RMARSLIMFG LCNGLIGPGT ALVEASSGST AVSEAYFAEL
LGLPFIAVVP RSTSRQKVTA IERFGGRCHF VDRSSEVYGA AQMIAADLGG LYLDQFTYAE
RAIDWRTGNI AESIFKQMAG ERHPVPEWIV MSTGTGGTSA TIGRYIRFSR QKTRLCGVDV
ENSCFFEAYK SSSRTANCIR GSRIEGVGRP RVEPSFVPSV IDQMMRVPDA ASIAATRVLT
SRLSHRVGGS TGANFIGLCW CAAAMLREGL SGSLVTVLCD DGERYSDTYY NDDWLKEQDI
VIAPYVAAIE RFLDSGVFEM PADGAGFECA SRPTPRARNA SEDGV