| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2884 |
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| Symbol | |
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| ID | 3910678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3284224 |
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| End bp | 3285288 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637884785 |
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| Product | dihydrouridine synthase TIM-barrel protein NifR3 |
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| Protein accession | YP_486497 |
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| Protein GI | 86750001 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.423298 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCGCT GGCGACAGAA TGAGCAGCTT GTGACCCGAC CTACAGTAAC AGGTTCGCCG
CCTTTGAGAA TTGGCAAAAT TGCGGTGGCC AATCGCGTGC TGCTGGCGCC GATGTCCGGC
ATTACAGATG CGCCGTTTCG CAAACAGGTC GCAGCTCTCG GCGCCGGGCT CGTGGTATCC
GAGATGACCG CCAGCGAAGA TCTTGTGCAG GGGCGCGCGA TGTCTGTCCG CCGCTGCGAC
GCCATCGACG ACGGGCCGCA TGTGGTTCAG CTCGCCGGCT GCGAGCCGCA CTGGATGGCG
GAAGCCGCCC GGATCGCGGA AGCCGGCGGC GCCGATATCA TCGACATCAA TATGGGCTGC
CCGGCGCGGC ATGTGACCGG CGGCCAGTCC GGATCGGCCT TGATGCGTGA TCTCGATCAC
GCGCTGACGC TGATCGAGGC AACGATCGGC GCGGTGCGCG TGCCGGTGAC GCTGAAGATG
CGGCTCGGCT GGGACGATCG CTCGCGCAAC GCGCCGGAAC TGGCGCGGCG AGCCGAGGCC
GCCGGCGTGC AACTCGTGAC CGTGCATGGC CGCACCCGCA GTCAGTTCTA CAAGGGCGAA
GCCGACTGGC GTGCCGTCCG CGCGGTCCGC GACGCCGTCG GCATTCCGCT GGTCGTCAAT
GGCGATATCA CCTCGTATCA GATGGCGGTC GAGGCGCTGG ATCAGTCCGG CGCCGACGCG
GTGATGATCG GCCGCGGGGC GCAGGGGCAG CCGTGGCTGC CGGGCCAGAT CGGTCGCCGC
CTGCAGACCG GGATCGCCGA AGCGATGCCG TCGCTCACCG ATCAGCTCGC TTATCTGCGC
GCGCTGTATG ACGGCGTGCT CGGCCTGTAT GGCGAGCGCA TCGGGCTGCG CCATGCGCGC
AAACATCTCG GCTGGTCGCT CGACGTCGCC GCCGCCGCCA GCGGCGCGCC GCCGGCGACG
CTGAAGCGGT GGAGGACGAC GATCCTCACC GACGACAGCC CGACCCGTGT GCATCATGCG
CTCACTGACG CCTACGACGA TTTCGCCTGG AGAGCCGCCG CATGA
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| Protein sequence | MTRWRQNEQL VTRPTVTGSP PLRIGKIAVA NRVLLAPMSG ITDAPFRKQV AALGAGLVVS
EMTASEDLVQ GRAMSVRRCD AIDDGPHVVQ LAGCEPHWMA EAARIAEAGG ADIIDINMGC
PARHVTGGQS GSALMRDLDH ALTLIEATIG AVRVPVTLKM RLGWDDRSRN APELARRAEA
AGVQLVTVHG RTRSQFYKGE ADWRAVRAVR DAVGIPLVVN GDITSYQMAV EALDQSGADA
VMIGRGAQGQ PWLPGQIGRR LQTGIAEAMP SLTDQLAYLR ALYDGVLGLY GERIGLRHAR
KHLGWSLDVA AAASGAPPAT LKRWRTTILT DDSPTRVHHA LTDAYDDFAW RAAA
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