| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2850 |
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| Symbol | |
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| ID | 3910643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3245221 |
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| End bp | 3248736 |
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| Gene Length | 3516 bp |
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| Protein Length | 1171 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637884750 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_486463 |
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| Protein GI | 86749967 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.334437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGCGC CGTCGCGATC GCCCGCGGAG CTGCTGGCAC CCGGCAAGGC GTTGACCTTC
GCCAATGTCG CCGAGGGCGC CGAGGGGCTG ATCGTGTCCG ATCTCGCCCG TGCGATCGCG
GCGCGGCCGA AACCGCCCGC GGTCAGCCTC GCGGTGATCT GCCGCGACGG GCCGCGGATG
CAGCAGCTCG AGCGCAGCCT TGAATTTTTT GCGCCCGACG TCGGCGTCAT GCAGTTTCCG
GCGTGGGACT GCCAGCCCTA TGACCGCGTC TCGCCGCATG CCGGCATTCT CGCCCAGCGC
GTCACCACGC TGGCGCGGCT GTCGCGGCTC GCCGGCAGCG ACAAGCCGCT GATCGTGCTG
ACCACGGTCA ACGCCGCGGT GCAGCGGGTG CCGGCGCGCG AGGTGATCGC CGCGCAGGCG
CTGTCGGTGG CGCCCGGCAA CATCGTGCCG ATGGATTCGA TCGCCGCGTG GCTCGAGCAC
AATGGCTACA GCCGTGCCTC GACGGTGCGC GAGCCCGGCG AATACGCGGT GCGCGGCGGC
ATCCTCGATC TGTTTCCGGC CGGGCTCGAA CAGCCGGTGC GGTTCGATTT CTTCGGCGAC
CAGCTCGAAT CGATCCGCAC TTTCGACGCC GAGACCCAGC GCACGCTGCA CACCATGCGC
GGCCTCGATC TCGTTCCGGT CTCCGAATTC CAGCTCGTCA CCGAAACCAT CCGCCGCTTC
CGGATGGGCT ATGTCGCCGC CTTCGGCGCG CCGGATCGCG ACGACCAGCT CTACACGTCG
ATCAGCGAAG GCCGCCGCCA TCCCGGCATG GAGCACTGGC TGCCGTTGTT TCAGGAACGG
ATGGACGCGC TGTTCGATTA TCTTCCCGGC ACGCCGGTGG CGATCGAACC GCAGAGCGAG
GACGCCGCGC GCGAGCGGTT CAAGCAGATC GCCGACTACT ACGACGCCCG GCGCGAAGCG
ATGGAGCATC CCGGCTCCGG CGCGATCTAC AAGCCGCTGC CGCCGGATCA GCTCTATCTC
ACAGAAGCCG AATGGACCGC ACGGCTGCAG GGCATCTCGT TGGCACGGCT GACGCCGTTC
GATGTGCCGG ACGATGGTTC GTCAGTGATC GACGCCGGCG CGCGCGCCGG CCGCAACTTC
GCGCCGGAGC GGGCCGACAC CTCGGTCAAT GTGTTCCAGG CGCTGGTCGC GCATGTGCAG
GCGCTGCAGG CCGCGCGCAA AAAGGTGGTG ATCGCGCTGT GGAGCGAAGG CTCGCGCGAC
CGCATGGCCA GCATGTTGAA GGACCACAAG CTGGTGCATC TCACCAGCGT CAATTCCTGG
CGCACCGTGC AGGCGACGCC GCGCAACGAG GCGATGCTGG CGGTGGTGGG TCTCGAATCC
GGATTCGAGA CCGATGCGTT CGCGGTGATC ACCGAGCAGG ACGTGCTCGG CGACCGCCTG
GTGCGGCAGC GCAAGTCAGC CAAGAAGCTC GACAATTTCA TCTCCGAAGT CACCAGCCTG
TCGAGCGGCG ACATCGTCGT GCATGTCGAG CACGGCATCG GCCGCTTCAT CGGATTGCAG
ACGCTGGAAG TCGGCGGTGC GCCGCACGAC TGCGTCGAGC TGCACTACGC CAACGATACC
AAACTGTTTC TGCCGGTCGA GAACATCGAG CTGTTGTCGC GCTACGGCTC GGACGGGACC
AGTGTCGAAC TCGACAGGCT CGGCGGAGGC GGCTGGCAGG CGCGCAAGGC CAAGCTGAAG
AACCGCATCC GCCAGATCGC CGGCGAACTG ATCAAGGTCG CGGCCGAGCG GCATCTGCGC
GAGGCGCCGA AGCTCCACGT AGAGCCGCAT CTCTACGACG AATTCTGCGC GCGCTTTCCC
TATGAGGAGA CCGAGGACCA GCTCGCGGCG ATCAATGCCG CCCTCGGCGA TCTCGAACGC
GGCATGCCGA TGGATCGCCT GGTCTGCGGC GACGTCGGCT TCGGCAAGAC CGAGGTGGCG
CTACGCGCGG CCTTTGCGGT GGCGCTGGAC GGCAAGCAGG TCGCCGTGGT GGTGCCGACC
ACCTTGCTGG CGCGGCAGCA CGCCAAGACT TTCACCGAGC GCTTCCGTGG CTTTCCGGTG
AATGTCGGCC AGGCGTCGCG GCTGGTGTCG CCGAAGGAAT TGACGCAGGT GAAGAAGGGC
CTCGCCGAGG GCCAGATCGA CATCGTCGTC GGCACCCACG CGCTGCTCGG CAAGGGCATC
AAGTTCAAGG ATCTCGGCCT CGTCGTGGTC GACGAGGAGC AGCATTTCGG CGTCACCCAC
AAGGAGAAGC TGAAGCAGCT CCGCTCCGAG GTGCACGTGC TGACGCTGAG CGCGACGCCG
ATCCCGCGCA CGCTGCAACT CGCCATGACC GGCGTGCGCG ATCTGTCGAT CATCGCCTCG
CCGCCGGTCG ACCGGCTCGC GGTGCGCACC TTCGTGGCCC CGCACGATCC GTTGATGATC
CGCGAGGCGC TGCTGCGCGA GCGCTATCGC GGCGGCCAGG CGTTCTACGT CGTGCCGCGG
ATCGACGACC TCGCCGAGGT CAAGGACTTC CTCGACAAAC ATGTGCCCGA GATGAAGGTC
GCGGTCGCCC ACGGCCAGAT GCCGCCGACG GTGATCGAGG ACATCATGTC GGCGTTCTAC
GACGCAAAAT ACGACATCCT GCTGTCGACC ACGATCGTCG AATCCGGCCT CGACATTCCG
AACGCCAATA CGCTGATCGT GCATCGCGCC GACATGTTCG GCCTGGCGCA GCTCTATCAG
CTCCGCGGCC GCGTCGGCCG CTCCAAGCTG CGGGCCTATG CGCTGTTCAC GCTGCCGCAG
CACAACATCA CGGCGCAAGC GGAGCGCCGC CTGAAGGTAC TGCAATCGCT GGAGACGCTC
GGCGCCGGTT TCCAGCTCGC CTCACACGAT CTCGACATCC GCGGTGCCGG CAATCTGCTC
GGCGAGGAGC AGTCCGGCCA CATCAAGGAA GTCGGCTTCG AGCTGTATCA GCAGATGCTC
GAGGAGGCGA TCACCAACCT CAAGGCCGGC GTTTCCGAGC CGGTCGCCGA CCGCTGGTCG
CCGCAGATCA CCGTCGGCAT GCCGGTGCTG ATCCCCGAGG ACTTCGTCAA GGACCTGTCG
GTGCGGCTGT CGCTGTATCG CCGGCTGGCC GATCTCGACA GCGACGAGGA GATCGAGAAT
TTCGCCGCCG AGTTGCGCGA TCGGTTCGGT GTGCTGCCGG ACGAGGTACG CTATCTGTTC
AAGGTCGCGG CGATCAAGGC GTATTGCCGG CACGCCAATG TCGAGAAGGT CGATGCCGGC
CCGAAGGGCG TCGTCATCAC CTTCCGCGAC AACGCGTTCG CGCATCCCGA CAGGCTGGTG
ACCTTCATCC GCCGCCATGG CGACGCCGCC AAGGTGCGGC CGGACATGAA GGTGGTGTTC
TTCCAGGTGT GGAAGACCCC GGAAGAGCGG CTCGTCGGCA CCACCGAGAT CATGCGCCAG
CTCGCCGAAC TGGCCGAAGC CAAGAAGGCG GCCTGA
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| Protein sequence | MKAPSRSPAE LLAPGKALTF ANVAEGAEGL IVSDLARAIA ARPKPPAVSL AVICRDGPRM
QQLERSLEFF APDVGVMQFP AWDCQPYDRV SPHAGILAQR VTTLARLSRL AGSDKPLIVL
TTVNAAVQRV PAREVIAAQA LSVAPGNIVP MDSIAAWLEH NGYSRASTVR EPGEYAVRGG
ILDLFPAGLE QPVRFDFFGD QLESIRTFDA ETQRTLHTMR GLDLVPVSEF QLVTETIRRF
RMGYVAAFGA PDRDDQLYTS ISEGRRHPGM EHWLPLFQER MDALFDYLPG TPVAIEPQSE
DAARERFKQI ADYYDARREA MEHPGSGAIY KPLPPDQLYL TEAEWTARLQ GISLARLTPF
DVPDDGSSVI DAGARAGRNF APERADTSVN VFQALVAHVQ ALQAARKKVV IALWSEGSRD
RMASMLKDHK LVHLTSVNSW RTVQATPRNE AMLAVVGLES GFETDAFAVI TEQDVLGDRL
VRQRKSAKKL DNFISEVTSL SSGDIVVHVE HGIGRFIGLQ TLEVGGAPHD CVELHYANDT
KLFLPVENIE LLSRYGSDGT SVELDRLGGG GWQARKAKLK NRIRQIAGEL IKVAAERHLR
EAPKLHVEPH LYDEFCARFP YEETEDQLAA INAALGDLER GMPMDRLVCG DVGFGKTEVA
LRAAFAVALD GKQVAVVVPT TLLARQHAKT FTERFRGFPV NVGQASRLVS PKELTQVKKG
LAEGQIDIVV GTHALLGKGI KFKDLGLVVV DEEQHFGVTH KEKLKQLRSE VHVLTLSATP
IPRTLQLAMT GVRDLSIIAS PPVDRLAVRT FVAPHDPLMI REALLRERYR GGQAFYVVPR
IDDLAEVKDF LDKHVPEMKV AVAHGQMPPT VIEDIMSAFY DAKYDILLST TIVESGLDIP
NANTLIVHRA DMFGLAQLYQ LRGRVGRSKL RAYALFTLPQ HNITAQAERR LKVLQSLETL
GAGFQLASHD LDIRGAGNLL GEEQSGHIKE VGFELYQQML EEAITNLKAG VSEPVADRWS
PQITVGMPVL IPEDFVKDLS VRLSLYRRLA DLDSDEEIEN FAAELRDRFG VLPDEVRYLF
KVAAIKAYCR HANVEKVDAG PKGVVITFRD NAFAHPDRLV TFIRRHGDAA KVRPDMKVVF
FQVWKTPEER LVGTTEIMRQ LAELAEAKKA A
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