| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2756 |
|---|
| Symbol | |
|---|
| ID | 3910549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 3140896 |
|---|
| End bp | 3144024 |
|---|
| Gene Length | 3129 bp |
|---|
| Protein Length | 1042 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637884656 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_486369 |
|---|
| Protein GI | 86749873 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0866619 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.681611 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTTT CCGAGCTGTG CATCCGGCGG CCGGTTCTGA CCACGCTGAT CACCGCGTCG
ATCATCGCCT TCGGGATCTT CGGCTATCGA CTGCTGCCGG TTTCGGCGTT GCCGAAAGTC
GATTTCCCGA CCATTGCGGT GACGGCGACG CTTCCGGGCG CCAGCGCCGA CACCATGGCG
GCGTCGGTCG CCGGCATCAT CGAGCGCCAG CTCTCGACCA TCGCCGGCAT CTCCTCGATG
TCGTCGAACT CGTCGCAGGG CACCTCGGTC ATCACCATCC AGTTCGACCT CGGCCGCAAT
ATCGATGCCG CCGCGCTCGA CGTCCAGACC GCGCTGACGA TCGCGCAGCG GCGCCTGCCG
ATCGAGATGA CGACGCCCCC GAGTTTTCGA AAAGTGAACC CGGCGGAGTT CCCGGTGCTG
TTCGTGGCGT TGAGTTCGCC GACGCTGCCA TTGTCTGCGG TCAACGAATA CGGCGACATC
ACCATCGGGC AGGCTCTGTC GCAGATTCCC GGCGTCGCTC AGGTGACGAT CTACGGCGCG
CAGAAGTTCG CCATTCGGGT CCAGGCCGAT CCGGAAGCCG CTGCGGCACG TGGATTGTCG
CTCGAAGACA TCCGCATCGC GGTGGCGCGC GCCAATTCCT CGACCCCGGT CGGCACCATG
AGCGGGCCGA AGCAGGACTT CGCGCTGCAG GCCTCCGGCC AGATGGACAA GGCGGTCGAC
TACCGCCACA TCGTGGTGGC CTGGCGCAAC GGCTCGCCGG TCAAGCTCGA TGAAGTCGCC
CGGGTCTACG ACAGCGTCGA GAACGACCGG CTGGCGACCT GGTTCAACGG CGAGCGCTCG
ATCGTGCTTG CGATCCAGAA ACAACCCGAC GCCAACACCG TGGCCGTGGT GGACGGCGTC
CGCGCCAAGC TGCCGTCATT GCGCGCCCAG ATCCCGCCCT CGGTCGCGAT GACCGTGATG
ATGGACCGCT CTGTGTCGGT GCGGCAGGCG GTGTTCGACG TCCAGGAGAC ATTGGCGATC
GCCGTTGTGC TGGTCGTGCT GGTGATCTTC CTGTTCCTGC GCAAGGCGTC CGCGACCTTC
ATCCCGGCGC TGGCGGTGCC GATCTCGCTG CTCGGCACCT TCGCCGTGAT GTACATGCTC
GATTTCTCGA TCAACAACAT GACGCTGCTG GCGCTGACGC TGTCCGTCGG CTTCGTCGTC
GACGACGCCA TCGTCATGCT CGAGAACATC ATGCGCCACG TCGAGCAAGG CATGCGACCG
TTCGATGCGG CGCTGAAGGG GGCGCGCGAA ATCGGCTTCA CCATCATCTC GATCACCTTC
TCGCTGATCG CGGTGTTCAT CCCGGTGCTG CTGATGGGCG GCATTGTCGG CCGCGTATTC
CGCGAATTTT CCGTCACCAT CGCTGTGGCG ATCCTGGTGT CGGGCTTCGT GTCGCTGACG
CTGACGCCGA TGCTGTGCGC GCGAATGCTC AAGGCGCACG ACCCGCACAA GAAGGAAAAC
ATCGTCCTGC GCGGCTTCGA GACGATGTTC AGCCGCTGGC TGCGCGGCTA CGAATGGGCG
CTCGACCGCG TGCTGGCGCA CAAATTCCTG ATGCTGATGG TGACCTTCGC CACGCTCGGC
GGCACGATCT ATCTCTACAT GGTCGTGCCT AAAGGGTTCT TTCCGCAGGA AGATACCGGC
TTCCTGATCG GCGTCACCGA GGCCGCGACC GACACCTCGT TCGAGGCGAT GAAGGATCGC
CAGCTCGCGC TGGTCGAGGT CATCAAGACC GATCCGGCTG TCGACTACAT CAACAGCACG
GTCGGCGCCG GCGGCCCGAA TGCCACCGCG AATTACGGCC GGCTGTTCGT CGCCCTGAAG
CCGATCAAAG AGCGCGATCC GGCCGCCAAG GTGATCACGC GTTTGCGGCA GAAGGCCGGA
CAGATCCCCG GAATGCAGGT GTTCTTCCAG AGCATCCAGA ATCTGTCGAT CGGCGGCCGC
ATTTCCAAAA GCCAGTATCA ATATGTGATG CAGAGCGGCG ACACCGAGGC GCTGTACCGC
CTCGCCCCGG AGATGCGTGA CAAGATCGCC AGATTGCCGG GCCTGCTCGA CGTCACCACT
GATCTTTACA TCAAGAACCC GCAAATGACG ATCGAGATCG ACCGCGAAAA GGCGGCCGTC
TATGGCATCA CCGTCGATCA GGTGCGCAAC CAGCTCTACA ACGCCTACGG TGCACGGCAG
ATCGGCACGA TCTACATGCC GTCGAACGAC TATCAGATTA TCCTCGAGGT GCAGCCGCAG
TTCCGCGGTG ATCCGAACGA CATCTCGAAG CTCTATCTCA AGACCGGCAA CAACCAGACC
ATTCCGATCG ACGCGGTGGC CAAGATGGTG CCCACCGTCG GCCCGCTGCA GATCAATCAC
CAGGGTCAGC AGCCCGCGGT GACGATCTCG TTCAATCTCG CGGAAGGCCA GTCGCTCGGC
GCCGCGGTCG ATCGCATCAC CCAGATCGAG CAGGAGTCCA ATTTGCCGGT CACGATCGTG
ACCGGGTTCT CCGGCACGGC CCAGGTGTTT CAGGAAAGTC TGCGCGGGCA GGGCGTGTTG
ATCCTCGCCG CAGTGTTCGC GGCGTTCGTG ATCCTCGGCA TCCTGTACGA GAGCTTCATC
CACCCGATCA CCATCATCTC CGGCCTGCCG TCGGCCGGTA TCGGCGCGAT CCTGACGTTG
ATGCTGTTCG ACATGGAGCT CTCGGTGATC GCGATGATCG GCATCGTGAT GCTGGTCGGT
ATCGTCAAGA AGAATGCGAT CATGATGGTC GATTTCGCCC TGGAGCGGCG GCGCGTCGGG
CTGTCGGCCG AGCACGCCAT CCGCGAGGCG GCACTGCTGC GGTTCCGACC GATCATGATG
ACGACCTTCG CCGCGATCTT CGGCACGCTG CCGATCGCGC TCGGCACCGG CGCTGGCGCT
GAGCTGCGTC AGCCGCTCGG CGTCGCCGTG GTCGGCGGGC TGTGCGTTTC GCAATTGCTG
ACGCTGTTCA TCACCCCGGT GATCTACATC TATCTCGACA AGATCGATCG CAAGCTGAAG
CGCCGGCTCG AGCCGCAGCA CGAGGAATTG CCCGACGGCG AGCGCCCGCG GGCGGTGGCG
GCGGAATGA
|
|---|
| Protein sequence | MTLSELCIRR PVLTTLITAS IIAFGIFGYR LLPVSALPKV DFPTIAVTAT LPGASADTMA
ASVAGIIERQ LSTIAGISSM SSNSSQGTSV ITIQFDLGRN IDAAALDVQT ALTIAQRRLP
IEMTTPPSFR KVNPAEFPVL FVALSSPTLP LSAVNEYGDI TIGQALSQIP GVAQVTIYGA
QKFAIRVQAD PEAAAARGLS LEDIRIAVAR ANSSTPVGTM SGPKQDFALQ ASGQMDKAVD
YRHIVVAWRN GSPVKLDEVA RVYDSVENDR LATWFNGERS IVLAIQKQPD ANTVAVVDGV
RAKLPSLRAQ IPPSVAMTVM MDRSVSVRQA VFDVQETLAI AVVLVVLVIF LFLRKASATF
IPALAVPISL LGTFAVMYML DFSINNMTLL ALTLSVGFVV DDAIVMLENI MRHVEQGMRP
FDAALKGARE IGFTIISITF SLIAVFIPVL LMGGIVGRVF REFSVTIAVA ILVSGFVSLT
LTPMLCARML KAHDPHKKEN IVLRGFETMF SRWLRGYEWA LDRVLAHKFL MLMVTFATLG
GTIYLYMVVP KGFFPQEDTG FLIGVTEAAT DTSFEAMKDR QLALVEVIKT DPAVDYINST
VGAGGPNATA NYGRLFVALK PIKERDPAAK VITRLRQKAG QIPGMQVFFQ SIQNLSIGGR
ISKSQYQYVM QSGDTEALYR LAPEMRDKIA RLPGLLDVTT DLYIKNPQMT IEIDREKAAV
YGITVDQVRN QLYNAYGARQ IGTIYMPSND YQIILEVQPQ FRGDPNDISK LYLKTGNNQT
IPIDAVAKMV PTVGPLQINH QGQQPAVTIS FNLAEGQSLG AAVDRITQIE QESNLPVTIV
TGFSGTAQVF QESLRGQGVL ILAAVFAAFV ILGILYESFI HPITIISGLP SAGIGAILTL
MLFDMELSVI AMIGIVMLVG IVKKNAIMMV DFALERRRVG LSAEHAIREA ALLRFRPIMM
TTFAAIFGTL PIALGTGAGA ELRQPLGVAV VGGLCVSQLL TLFITPVIYI YLDKIDRKLK
RRLEPQHEEL PDGERPRAVA AE
|
|---|
| |