| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2732 |
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| Symbol | secD |
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| ID | 3910525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3115572 |
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| End bp | 3117173 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637884632 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_486345 |
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| Protein GI | 86749849 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.735593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.282861 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTATT TCACACGGTG GAAGGCGCTG GCGGTCATTG TGACGGCGCT GGCGGTGTGC
CTTTGCGCCG TTCCCAACTT CTTCCCCGAC CACACCGTGA AGACCTGGCC GAAATGGGCG
CAGCGCCATC TGGTGCTGGG CCTCGACCTG CAGGGCGGCT CGCACATCCT GCTCGAGGTC
GACGCCAATT CGGTGAGGAA GGACAAGCTC GATTCGGTGC GCGACGATGC GCGCCGGGTG
CTGCGCGAAG CCCGGATCGC CTATACGGGT CTGGCGACGA AGGGCGACCA GGTCGAGGTT
CGGATCAGCA AGGAGAACGA GGTCCCGACC GCGCTCACCA AGCTGCGTGA GCTGTCGCAG
CCGCTCGGTG GCTTGCTCGG CAGCAACGGC CAGCGCAGCC TCGACGTCAC CGATGCCGGT
GGCGGCTTGA TCCGGCTGAC CGTGCCGCAG GCGGCGATCG CCGAACGGGT GCGCCAGTCG
GTCGACCAGT CGATCCAGAT CGTCGAGCGC CGCGTCAACG AACTCGGCAC CGTCGAGCCG
CTGATCCAGC GTCAGGGCGC CGATCGGATT CTCGTCCAGG TGCCCGGTCT GCAGGATCCG
ACCCGATTGA AGGAACTGCT CGGCAAGACA GCCAAGCTCG ACTTCCGCAT GGTGGATTCC
TCGGTGTCGC CCGAACAGGC GCAAGCGGGC CGCGCGCCGT CGGATTCCGA TGTGCTGATG
AGTTCGTCGT CGCCGAAGCA GCCTTACGTC ATCAAGAAGC AGGTGCTGGT GTCCGGCGCC
GATCTCACCG ACGCGCAGCC GGGCTTCGAC CAGCGCACCA GCGAGCCGAT CGTCAGCTTC
CGCTTCAACA CCAACGGCGC CCGCAAATTC GCCCGCGCCA CCACCGAGAA TGTCGGCCAA
CCGTTCGCGA TCGTGCTCGA CAACGAGGTG ATCTCCGCGC CCGTGATCCG TGAGCCGATC
ACCGGCGGCT CCGGCCAGAT TTCCGGCAGC TTCACCGTGC AGGGCGCCAA CGATCTCGCG
ATCCTGCTGC GCGCCGGCGC GCTGCCGGCG CCGCTGACGA TCATCGAGGA ACGCACCGTC
GGCCCCGGCC TCGGCCAGGA TTCGATCGAG AAGGGCGAAC TCGCGGCCTA TGTCGGCTCG
ATCCTCGTCA TCATCTTCAT GCTGCTGACC TACCGGCTGT TCGGCGTGTT CGCCAACATC
GCGGTGGCCG TCAACGTGGC GATGATCTTC GGCGTGCTGT CGCTGCTCAA CGCCACGCTG
ACGCTGCCCG GCATCGCCGG CGTGGTGCTC ACCGTCGGCA TCGCGGTGGA CTCCAACGTG
CTGATCTACG AGCGCATCCG CGAGGAGCTG CGCGCCGGCC GCAATGCGAT CTCGGCGATC
GATGCCGGCT TCAAGCGGGC GCTGTCGACG ATTCTCGATT CCAACATCAC CACCTTCATC
GCCGCCGCGG TGCTGTTCTA CATCGGCACC GGGCCGGTGC GCGGCTTCGC GGTGACGCTC
GGCATCGGCA TTATCACCAC CGTGTTCACC GCCTTCACCG TGACCCGGCT GATCGTTGCC
ACCTGGGTGC GGTGGAAGCG GCCGCAGACC GTGCCGATCT GA
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| Protein sequence | MLYFTRWKAL AVIVTALAVC LCAVPNFFPD HTVKTWPKWA QRHLVLGLDL QGGSHILLEV
DANSVRKDKL DSVRDDARRV LREARIAYTG LATKGDQVEV RISKENEVPT ALTKLRELSQ
PLGGLLGSNG QRSLDVTDAG GGLIRLTVPQ AAIAERVRQS VDQSIQIVER RVNELGTVEP
LIQRQGADRI LVQVPGLQDP TRLKELLGKT AKLDFRMVDS SVSPEQAQAG RAPSDSDVLM
SSSSPKQPYV IKKQVLVSGA DLTDAQPGFD QRTSEPIVSF RFNTNGARKF ARATTENVGQ
PFAIVLDNEV ISAPVIREPI TGGSGQISGS FTVQGANDLA ILLRAGALPA PLTIIEERTV
GPGLGQDSIE KGELAAYVGS ILVIIFMLLT YRLFGVFANI AVAVNVAMIF GVLSLLNATL
TLPGIAGVVL TVGIAVDSNV LIYERIREEL RAGRNAISAI DAGFKRALST ILDSNITTFI
AAAVLFYIGT GPVRGFAVTL GIGIITTVFT AFTVTRLIVA TWVRWKRPQT VPI
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