| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2728 |
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| Symbol | |
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| ID | 3910521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 3111557 |
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| End bp | 3113005 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637884628 |
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| Product | tRNA (uracil-5-)-methyltransferase Gid |
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| Protein accession | YP_486341 |
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| Protein GI | 86749845 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
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| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.133983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.263961 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCATTG CCGCGCCCCC TCCCCAACCC GCGTCCAACC AGCCTGTTCA CGTCATCGGC
GGCGGCCTCG CCGGCTCCGA AGCCACCTGG CAATTGGCGC GCGCCGGCGT GCGCGTCGTG
CTGCACGAGA TGCGGCCGCA TCGCTCGACA GAGGCGCACA AGACCGACGG CCTCGCCGAG
CTGGTCTGCT CCAATTCCTT CCGCTCCGAT GACGCCGCCA ACAACGCGGT CGGGCTGCTG
CACGCCGAGA TGCGCCGGCT CGGCTCGCTG GTGATGCGCG CGGCCGACGC CAATCAGGTC
CCGGCCGGCG GCGCGCTGGC GGTCGATCGC GACGGCTTCT CCGCCGCCGT CACGAAGGCG
CTGGCCGAGC ATCCGCTGAT CGAGATCCGC CGCGAGGAAA TCGCCGGCCT GCCGCCGGAG
GACTGGGGCA ACGTCATCGT CGCCACCGGC CCGCTGACCT CGGCGGCGCT GGCCGAGGCG
GTCCGCGCGC TGACCGATGA ATCCGCGCTG GCGTTCTTCG ACGCCATCGC CCCGATCGTG
CATCGCGACT CGATCGACAT GTCGATCGCC TGGTTCCAGT CGCGCTACGA CAAGGCCGGC
CCCGGCGGCA GCGGCGCCGA CTATCTCAAC TGCCCGATGA ATCGCGAGCA GTACGACGCT
TTCGTCGACG CGCTGATCGC CGGCGACAAG GTCGATTTCA AGGACTGGGA GAAGGACACG
CCGTATTTCG ACGGCTGCCT GCCGATCGAG GTGATGGCCG AGCGCGGCCG CGAGACGCTG
CGCCACGGGC CGATGAAGCC GGTCGGGCTC ACCAATCCGC ACAACCCGAC GGTCAAGGCC
TACGCCATCG TCCAGCTCCG CCAGGACAAC AAGCTCGGCA CGCTGTTCAA CATGGTCGGC
TTCCAGACCA AGCTGAACTA CGCCGCGCAG CAACGCGTCT TCCGCACCAT CCCGGGGCTG
GAAAATGCTG AATTTGCAAG GCTCGGCGGG CTGCATCGCA ACACGTTTCT GAACTCGCCG
AAGCTGCTCG ATGCCGGCCT GCGGCTGCGC GCCGCGCCGC GGCTGCGGTT CGCCGGCCAG
ATGACCGGCT GCGAAGGCTA TGTCGAATCA GCCGGCATCG GTCTCGTCGC CGGGCTCAGC
GCCGCCGCCG ACGCGCTCGG CCGATCCATG ACGACGCCGC CGCCGACCAC CGCGCTCGGC
GCCCTGCTCG GCCACATCAC CGGCGGCCAT ATCGAGACCA TCGACGCCGG CCCGCGCTCG
TTTCAGCCGA TGAACATCAA TTTCGGCCTG TTCCCGCCGC TGGCGCAGGC GCCGACCCAC
GGCCCCGACG GCAAGAAGCT GCGCGGCCCG GAAAAGTCGG TCGCCAAGAA ACAGGCGCTC
AGCGCCCGCG CGCTGGCGGA TCTGGATGCG TGGATCGCTG CAAGCCTGAA GCTACCGGCG
GCGGCGTAG
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| Protein sequence | MIIAAPPPQP ASNQPVHVIG GGLAGSEATW QLARAGVRVV LHEMRPHRST EAHKTDGLAE
LVCSNSFRSD DAANNAVGLL HAEMRRLGSL VMRAADANQV PAGGALAVDR DGFSAAVTKA
LAEHPLIEIR REEIAGLPPE DWGNVIVATG PLTSAALAEA VRALTDESAL AFFDAIAPIV
HRDSIDMSIA WFQSRYDKAG PGGSGADYLN CPMNREQYDA FVDALIAGDK VDFKDWEKDT
PYFDGCLPIE VMAERGRETL RHGPMKPVGL TNPHNPTVKA YAIVQLRQDN KLGTLFNMVG
FQTKLNYAAQ QRVFRTIPGL ENAEFARLGG LHRNTFLNSP KLLDAGLRLR AAPRLRFAGQ
MTGCEGYVES AGIGLVAGLS AAADALGRSM TTPPPTTALG ALLGHITGGH IETIDAGPRS
FQPMNINFGL FPPLAQAPTH GPDGKKLRGP EKSVAKKQAL SARALADLDA WIAASLKLPA
AA
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