| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2685 |
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| Symbol | |
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| ID | 3910478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3068033 |
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| End bp | 3069916 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637884585 |
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| Product | TrapT dctQ-M fusion permease, dicarboxylate transport |
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| Protein accession | YP_486298 |
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| Protein GI | 86749802 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.633009 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCACG CCGAGATCCC GCAACTGGCG GCTGGAAAGC CGCTCGACAT TGCGACGCGC
AGGTCGCTGA TCGGCGCGTT GGACTCCGGG CTGGGTCTGC TGGTCGAGAT CCCCGCGGCG
CTTTTGGTGG TCGCGGAGAT CGTCGTGCTG TTCGCCGGCG TGGTGTCGCG CTACGTGTTT
CACAGCCCGC TGATCTGGTC GGACGAGCTC GCCTCGATCC TGTTCCTGTG GCTGGCGATG
TTCGGCGCCG CGGTGGCGTT CCGCCGTGGC GAGCACATGC GGATGACCGC GCTGGTGGCG
AGCGCATCGC CCCGGCTGCG CGCGTTTCTC GATCTGGTCG CGATCTGCGC GGCGCTGGCC
TTCCTGCTGC TGATCGCGGC GCCGGCTTAC GACTACGCCT ACGAGGAAAG CTACATCACC
ACGCCGGCGC TGTCGCTGTC GAACGCCTGG CGCGCCGCGG CGCTACCGGT CGGCATCGTG
CTGATGACGC TGTTCGCGTT GCTGCGGCTG ATCCGGTTCG GCGACTGGCG GCTGGTGGCG
GGCGCCGCCC TCACCGTCGC CGTGCTGATC GGCGCGTTCT GGCTGGCGCA GCCGCTGTTC
AAGCCGCTCG GCAATCTCAA TCTGGTGATT TTCTTCGTCG GCGTGGTCGC TTGTTGCGTG
TTCGCCGGCG TGCCGATCGC TTTCGGATTT GGCCTCGCGA TCTACGGCTA TCTGGCGCTG
ACCACCTCGA CGCCGGTGAT GGTGCTGGTC GGCCGCATGG ACGAGGGCAT GAGCCATCTG
ATCCTGCTGT CGGTGCCGCT GTTCGTCTTC CTCGGCCTGC TGATCGAGAT GACCGGGATG
GCGCGGGCGA TGGTGGCGTT CCTCGCCAGC CTGCTCGGCC ATGTCCGCGG CGGCCTGCAT
TATGTGCTGG TCGGCGCGAT GTATCTGGTC TCCGGCATCT CCGGCTCCAA GGCCGCCGAC
ATGGCGGCGG TGGCGCCGGT GCTGTTTCCC GAGATGAAAG AGCGCGGCGC CAAGCCGGGC
GATCTGGTCG CCCTGCTCGC CGCCACCGGC GCCCAGACGG AAACCATTCC GCCGAGCCTG
GTGCTGATCA CCATCGGCTC GGTGACCGGC GTGTCGATCG CGGCGCTGTT CACCGGCGGC
CTGCTGCCGG GTGTCGTGCT GGCGATCACG CTGTCGATGC TGGTGTGGTG GCGCTATCGC
GACGAGGATC TCAGCCACAT CAGGCGCGCC AGCGGCGCCC AGATCGGCAA GACGCTGATC
ATTGCCCTGC CCGCATTGGC GCTGCCCTTC GTGATCCGCG CCGCCGTGGT CGAAGGCGTC
GCCACCGCCA CCGAAGTCTC GACCATCGGC ATCGTCTATG CGGTGTTCGC GGGGCTTCTG
ATCTACCGGA AGTTCGATTT TCGGCGGCTG AGGCCGATGC TGGTCGACAC CGCGGCGCTG
TCCGGCGCGA TCCTGCTGAT CATCGGCACC GCCACCGGCA TGGCCTGGGG GCTGACGCAA
TCCGGCTTCT CGCGATCGCT GGCCACCGCC ATGACCGGCC TGCCCGGCGG CCCCGCGACC
TTTCTCGCGG TGTCGATCGT GGCCTTCGTA ATCCTCGGCA GCGTGCTCGA AGGTATTCCG
GCGATCGTGC TGTTCGGGCC GCTGCTGTTC CCGATCGCCC GCGCCGTCGG CATCCACGAG
GTGCACTACG CCATGGTGGT CATTCTGGCG ATGGGCATCG GATTGTTCGC ACCGCCGTTC
GGGGTCGGCT ATTATGCGGC CTGCGCGATC GGCCGGGTCG ATCCGGCCGA GGGCGTGCGT
CCGATCCTGG GTTATCTGCT GGCGCTGATG GTCGGCTTGA TCATCGTCGC CGCGGTGCCG
TGGATTTCGA TCGGATTTCT GTGA
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| Protein sequence | MTHAEIPQLA AGKPLDIATR RSLIGALDSG LGLLVEIPAA LLVVAEIVVL FAGVVSRYVF
HSPLIWSDEL ASILFLWLAM FGAAVAFRRG EHMRMTALVA SASPRLRAFL DLVAICAALA
FLLLIAAPAY DYAYEESYIT TPALSLSNAW RAAALPVGIV LMTLFALLRL IRFGDWRLVA
GAALTVAVLI GAFWLAQPLF KPLGNLNLVI FFVGVVACCV FAGVPIAFGF GLAIYGYLAL
TTSTPVMVLV GRMDEGMSHL ILLSVPLFVF LGLLIEMTGM ARAMVAFLAS LLGHVRGGLH
YVLVGAMYLV SGISGSKAAD MAAVAPVLFP EMKERGAKPG DLVALLAATG AQTETIPPSL
VLITIGSVTG VSIAALFTGG LLPGVVLAIT LSMLVWWRYR DEDLSHIRRA SGAQIGKTLI
IALPALALPF VIRAAVVEGV ATATEVSTIG IVYAVFAGLL IYRKFDFRRL RPMLVDTAAL
SGAILLIIGT ATGMAWGLTQ SGFSRSLATA MTGLPGGPAT FLAVSIVAFV ILGSVLEGIP
AIVLFGPLLF PIARAVGIHE VHYAMVVILA MGIGLFAPPF GVGYYAACAI GRVDPAEGVR
PILGYLLALM VGLIIVAAVP WISIGFL
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