| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2654 |
|---|
| Symbol | |
|---|
| ID | 3910447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 3034615 |
|---|
| End bp | 3036888 |
|---|
| Gene Length | 2274 bp |
|---|
| Protein Length | 757 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637884554 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_486267 |
|---|
| Protein GI | 86749771 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0434213 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTC GAACAAGAAA AGCGACGAAG CAGACCCTTC TGCTTTGCAC GGTCAGCCTG
CTCGCACTGG CGGCCGATTT TCCGCACGGC GCGCGGGCGC AATCGAATCT GCCGGCGGTC
ACCGTCGACG CGCCGCAGCC GCAGCAGCGC GCGCGCAGCG CGCCGACGAC ATCGTCCCGC
AGCACGGCGC GCGCGACGCG CCGCGCCAAC CGCGCCGCGA CGACGCCGCC CCAGGCCGCG
CCGATGCCGT CGGTCCATGA GCGCATCTAT GCCGGCACCA ACAGCTATGT CGCCGGACAA
TCGAGCGCGG CCTCGAAGAC CGACACGCCG CTGATCGACA CGCCGCGTTC GGTCAGCGTG
ATCGATCGCA AGGAACTCGA CGATCGAGGC GTCACCAGCA TCCCGGAAGC GGTGCGCTAT
TCGGCGGGCG TCACCACCGG CGGCTACGGC TACGATCCGC GCTTCGACCA GATCTACATC
CGCGGCTTCT CGACCACGAC GCTCGGCGAT TTCCGTGACG GGCTGAAGCA GTTTCCGGCC
GGCTTCTCGA CCTTCCGCAC CGAGCCGTAT CAGCTCGACC GCGTCGAGAT CATCAAGGGG
CCGGCCGCGG TGCTGTACGG CCAATCGGTG CCGGGCGGAC TGGTCGATCG GCGGTCGAAA
TTTCCGGTGG AAAACCAGGT CAACGAGATC GCGATTCAGG CCGGCACGTT CGATCGCTTC
CAGACCGCCT TCGACATCGG CGGCGCCGCC AGTCCCGACA AGTCGCTGCT GTATCGGCTG
GTCGGTGTCG CCCGCAGCGG CGACACCAAT TTCGACGTCG CCGATCAAAG GCTGATGCTG
GCGCCGTCGC TGACCTGGCG ACCGACCGCC GACACCACGC TGACGACCTA CGCGCTGGTG
CAGAAGGACG AGACCGATTC CAGCGTCGCC GCGCTCAACC GCAACGGCAA ATTGCTGACC
GTCAACGGCG AATATCTGCG CGCCAGCGAT CCCAAATACG ACTATCTGAA GCTGCAGCAG
GTGCAGACCG GCTACAAGCT CGAGCACCGC TTCGACGACG TCTTCACCTT CCGGCAGCAC
ACGCGGTTCT CCAATCTGAA GACGGACTCG CGCTATCTCA GCGGAAGTTT CGCCAATACC
ACGACGTCGA TCTACAATCG CGCCGCCTAT GCGGTGGGCG ACGAGCAGAC CAGTTGGCAG
ACCGACAACA ATCTGCAGGC GGATTTCGCC ACCGGCCCGG TGGCGCACCG GGTGCTGGCC
GGCGTGAACT ACGACCACAA TGTCTGGGAC TTCCAGTTCG GCGGCAGCGG CGTGCAGTCG
GCCTACGCGC TCGACATCTC CAATCCAACC TACGGGATCG CCGGCGCGAC GCCGGCCTAC
ACCTCCGGTT CGCGCTCGAC CCAGGAGCAG GTGGGCGTCT ATCTGCAGGA TCAGATGCGG
CTCGGCGGCT GGCACCTGTC GCTGGCCGGG CGTCACGACT GGGCCGATCA GACCCGGATC
AACACCTACA CCAACGCCGT CACCGGTCAG CGCAACGATT CCGCCTTCTC CTACAGCGCC
GGGTTGCTGT ACCATTTCGA CAACGGCGTC GCGCCCTATG TCAGCTACGC GACCTCATTC
CAGCCGACGA CCTCGATGGC GATCGACGGC AGCGTGCTGG CGCCGTCCGA AGGCGAGCAG
TTCGAGGCCG GCGTGAAATA TCAGCCGCGT GCCGACGTGT TGCTGACCGC CTCGGTCTAC
GACCTGACGG AGAAGAACGC CGCCAAGCTC GCCGGCTACG TCAACGGCGT CGCCTATTAC
GCCTCGGTCG GCGAGATTCA CGTCCAGGGC GTCGAGCTCG AGGCGCGGGC GCGACTGACG
CCCGAATTGG AGACGGTGAC GGCCTATACG TTCTCCGATG CCGAGATCAC CAAGACGACC
GTCGCCAGCG AGCTGAACAA GGTTCCGGCG GTGACGCCGA AACACACCGC GTCGAGCTGG
CTCAACTATT CGTTCCTGAA CGGCCCGCTC GACGGACTAG GGCTGGGTGT CGGCGTCCGC
TACATCGATG CCACCTGGAC GTCGAATGCC AACACCGATC GCAACAATGG CTACACGCTG
GTCGATCTGG CGATGCGTTA CGATCTCGGC AAGCTGGCGC GGCAGTTCGC CGGGTTCCAA
GCCTCGGTCA ACGCCAACAA CATCGCCGAC GAGCAGATCG CGGTGTGCAA CGCCGGCTAT
TGCTATCTCA GCCAGGGGCG CACCGTGATC GGCACGCTGC GCTATCGCTG GTAG
|
|---|
| Protein sequence | MKFRTRKATK QTLLLCTVSL LALAADFPHG ARAQSNLPAV TVDAPQPQQR ARSAPTTSSR
STARATRRAN RAATTPPQAA PMPSVHERIY AGTNSYVAGQ SSAASKTDTP LIDTPRSVSV
IDRKELDDRG VTSIPEAVRY SAGVTTGGYG YDPRFDQIYI RGFSTTTLGD FRDGLKQFPA
GFSTFRTEPY QLDRVEIIKG PAAVLYGQSV PGGLVDRRSK FPVENQVNEI AIQAGTFDRF
QTAFDIGGAA SPDKSLLYRL VGVARSGDTN FDVADQRLML APSLTWRPTA DTTLTTYALV
QKDETDSSVA ALNRNGKLLT VNGEYLRASD PKYDYLKLQQ VQTGYKLEHR FDDVFTFRQH
TRFSNLKTDS RYLSGSFANT TTSIYNRAAY AVGDEQTSWQ TDNNLQADFA TGPVAHRVLA
GVNYDHNVWD FQFGGSGVQS AYALDISNPT YGIAGATPAY TSGSRSTQEQ VGVYLQDQMR
LGGWHLSLAG RHDWADQTRI NTYTNAVTGQ RNDSAFSYSA GLLYHFDNGV APYVSYATSF
QPTTSMAIDG SVLAPSEGEQ FEAGVKYQPR ADVLLTASVY DLTEKNAAKL AGYVNGVAYY
ASVGEIHVQG VELEARARLT PELETVTAYT FSDAEITKTT VASELNKVPA VTPKHTASSW
LNYSFLNGPL DGLGLGVGVR YIDATWTSNA NTDRNNGYTL VDLAMRYDLG KLARQFAGFQ
ASVNANNIAD EQIAVCNAGY CYLSQGRTVI GTLRYRW
|
|---|
| |