| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2639 |
|---|
| Symbol | nusB |
|---|
| ID | 3910431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 3018911 |
|---|
| End bp | 3019420 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637884538 |
|---|
| Product | transcription antitermination protein NusB |
|---|
| Protein accession | YP_486252 |
|---|
| Protein GI | 86749756 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0781] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR01951] transcription antitermination factor NusB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.093311 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.33721 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATT CCAAAAAGCC GGCGATCAAG AAGCCGGTCC CGAAGGGCGA CCGCAAGGCC
AATCGGCGCG GCGCTGCGCG GCTCGCGGCC GTGCAGGCGC TCTACCAGAT GGACATCGGC
GGTGCCGGCA TCAACGAGAC CTTCGCCGAG TTCGAGAGCC ACTGGATCGG CAACGAGGTC
GAGGGTGATC AATATCTGCC GGCCGAGGCC GCGTTCTTCC GCGACGTCGT CTCCGGCGTG
GTGCGCGACC AGAAGAAGCT CGACCCGTTG ATCGACGACG CGCTGGCGAA GGGCTGGCCG
CTGGCGCGGA TCGACGCCAT CCTCCGCGCG GTGATGCGTG CCGGCGCCTA CGAGCTCGAA
CACCGCAAGG ATATCCCGGC GCGCGTCGTC GTCTCCGAAT ATGTCGACGT CGCCCACGCC
TTCGTCGAGA AGGACGAGAC AGGCATGGTC AACGCCGTGC TCGACCAGAT CGCCCGGCAG
TTTCGTGAAG ACGAGTTTAC GCGGGGGTAG
|
|---|
| Protein sequence | MADSKKPAIK KPVPKGDRKA NRRGAARLAA VQALYQMDIG GAGINETFAE FESHWIGNEV
EGDQYLPAEA AFFRDVVSGV VRDQKKLDPL IDDALAKGWP LARIDAILRA VMRAGAYELE
HRKDIPARVV VSEYVDVAHA FVEKDETGMV NAVLDQIARQ FREDEFTRG
|
|---|
| |