| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2636 |
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| Symbol | |
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| ID | 3910428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 3016487 |
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| End bp | 3017656 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637884535 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_486249 |
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| Protein GI | 86749753 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.152876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.370836 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTTCC GCATCCTGGA AGACCAATAT GCCGAGCGCG CCAAGGTCGA AAAGGCCGCC
AAGGCAGCCG CCGCCACTGA TCGCCGCTTC ATGCAGCTCG CGCTGACGCT CGGCCGCCGT
GGCCTCGGCC GCACTGGCAC CAACCCCGCG GTCGGCGCGG TGCTGGTCAA GGACGGCGTC
ATCGTCGGCC GCGGCTGGAC CCAGGACGGT GGCCGGCCGC ACGCCGAAGT CGAAGCGCTG
GCGCGGGCCG GCGAGGCCGC GCGCGGCGCG ACGTTGTATG TGACGCTGGA GCCGTGCTCG
CATCACGGCC GCTCGCCGCC CTGCGCCGAT GCGATCATCG CCGCGGGCGT CGCCCGGGTG
GTGTCGGCGA TCGAGGATCC CAATCCGCTG GTGGGCGGGC AGGGCCATGG CAAGCTGCGC
GCCGCCGGCA TCGCGGTCGA GCTCGGGGTT TGCGTCGAGG AAGCCGCGCG CGATCACGCC
GGCCATCTGT TGCGCGTGCG CGAGCAGCGT CCGCATGTCG TGCTCAAGCT CGCAGTCTCG
ACCGACGACA AGATCGCGGC TGACGGCCGC AAGCCTGTGG CGATCACCGG CGAGGCTGCG
CGGGCGCGGG TGCATTTGCT GCGCGCGCAG TCGGATGCGA TCCTGGTCGG GATCGGCACC
GTGCTGGCCG ACGATCCGGA ACTGACCGTG CGGCTACCGG GAATGGCGAA ACAATCACCG
ATCCGCGTGG TGCTGGACCG CGCTCTGCGC ATCCCGGGAG ACAGCAAGCT GGTGCATTCG
GCGCGGGCGA CGCCGCTGTG GCTGATGGCA TCCGAGATCG CCGAGCCGGC CGCGGCCGCG
CGGCTCGGGG CGGCGGGGGC CGAGGTCATC CGCGCTCCCG ATTGTCAACG AACGCCCGGA
CTCGACATCG CCGCAGTCCT GGCCGCTTTG TCCGAAAAGG GCGTCACCCG GCTCCTGGTC
GAGGGCGGGG CGCGGGCCGC GCGGGCGTTC GTCGAGTCCG GTCTCGTCGA CGAGATCTGG
CTGTTGCGTG GCGACAAGGC GATCGGCGAA GACGGCGTCG ACGCCCTGGA CGGTTTGCCG
CTCGCCTCCA TCACCGCGTC GTCGGCTTGG CGCGTCCGCG ACAGCGAACG CCTCGGACCG
GACACGCTCA CGATTTTCGA ACCGGCTTAA
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| Protein sequence | MIFRILEDQY AERAKVEKAA KAAAATDRRF MQLALTLGRR GLGRTGTNPA VGAVLVKDGV
IVGRGWTQDG GRPHAEVEAL ARAGEAARGA TLYVTLEPCS HHGRSPPCAD AIIAAGVARV
VSAIEDPNPL VGGQGHGKLR AAGIAVELGV CVEEAARDHA GHLLRVREQR PHVVLKLAVS
TDDKIAADGR KPVAITGEAA RARVHLLRAQ SDAILVGIGT VLADDPELTV RLPGMAKQSP
IRVVLDRALR IPGDSKLVHS ARATPLWLMA SEIAEPAAAA RLGAAGAEVI RAPDCQRTPG
LDIAAVLAAL SEKGVTRLLV EGGARAARAF VESGLVDEIW LLRGDKAIGE DGVDALDGLP
LASITASSAW RVRDSERLGP DTLTIFEPA
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