| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2605 |
|---|
| Symbol | |
|---|
| ID | 3910397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2989033 |
|---|
| End bp | 2989635 |
|---|
| Gene Length | 603 bp |
|---|
| Protein Length | 200 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637884505 |
|---|
| Product | uracil-DNA glycosylase superfamily protein |
|---|
| Protein accession | YP_486219 |
|---|
| Protein GI | 86749723 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1573] Uracil-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00758] uracil-DNA glycosylase, family 4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0477634 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGTCCCA GGCTCGCGGA GTTCCGCCAC GAGCTTCGGG CGCGCGAGCC CGGCTGGCAC
AATGCGCCGG TGCCCTCGTT CGGCGATGCC GATGCCGCGC TGCTGATCGT CGGTCTCGCA
CCCGGCGTGC AAGGGGCCAA TCGGACCGGC CGTCCGTTCA CCGGCGACTA TGCCGGCGAT
CTGCTCTATG CGACATTGAT CGACTACGGC TTTGCGACGG GCCAATTCCA GGCTCGCCCC
GACGACGGGC TGCGTCTCGT GGGCTGCCGG ATCAGCAATG CGGTGCGCTG CGTGCCGCCG
CAGAACAAGC CCCTGCCCGT CGAGATCAAC ACCTGCCGGC GCTTTCTGGC CGCCACGATC
GAAACCATGC CGAAGCTGCG CGCGATCGTG CTGCTCGGCC GGATCGCGCA TGATTCGACG
CTGAAGGCCC TCGGCCTTCG GGCCTCACAG GCACCGTTCG GACACGGCGC GGTCCACGAC
GCCGGGGCGC TGCGGCTGTA CGACAGCTAT CATTGCTCGC GCTACAACAC CAACACCCGC
GTGTTGACGC CGAAGATGTT TCAAGACGTG TTCGCGCGGG TGCGCGCCGA TCTGGACGCG
TAG
|
|---|
| Protein sequence | MCPRLAEFRH ELRAREPGWH NAPVPSFGDA DAALLIVGLA PGVQGANRTG RPFTGDYAGD
LLYATLIDYG FATGQFQARP DDGLRLVGCR ISNAVRCVPP QNKPLPVEIN TCRRFLAATI
ETMPKLRAIV LLGRIAHDST LKALGLRASQ APFGHGAVHD AGALRLYDSY HCSRYNTNTR
VLTPKMFQDV FARVRADLDA
|
|---|
| |