| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2601 |
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| Symbol | dnaE |
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| ID | 3910393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2983527 |
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| End bp | 2986982 |
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| Gene Length | 3456 bp |
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| Protein Length | 1151 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637884501 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_486215 |
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| Protein GI | 86749719 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.742859 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAG CCGGATTCGT CCATCTGCAC GTTCACTCGG CCTATTCGCT GCTGAAAGGC
TCGATGAAGA TCGCGCGGCT GGCGGACCTC GCCAAGGCCG ACCACCAGCC GGCGCTGGCG
CTGACCGACA CCGACAACAT GTTCGGTGCG CTGGAATTCT CCGATAAGCT CGCGGGCAGC
GGCATTCAGC CGATCGTCGG CCTCGAACTC GGCATCGACT TCGGCGACCA GGATCCGACC
TCACGCAACG CGGCGCTGGC GGCGCCGGCG CGGGTGGTGC TGCTGGCGAC GCGCGAGCGC
GGCTACCGCA GCCTGATGCG GCTGAACTCG CGGGCCTTCC TCGAAACCCC GGTGAACCAG
CCGCCGCACA TCAAGTTCGA CTGGCTGGAT GGCGAGACCG ACGACGTGAT CGCGCTGACC
GGCGGGCCGG AGGGGCCGAT CTCGCTGGCG ATGCTGACCG ACCCGGCGCT CGGCCGGCTG
CGCTGCGAGC GGCTGGCGCA GGCGTTCGGC GACCGGCTCT ATGTCGAGCT GCAGCGCCAC
AACACCGATG TCGAACGGCG CGCCGAAGCC GGCCTGATCG ACATCGCCTA CGACATGGGG
CTGCCGCTGG TCGCGACCAA CGAGCCGCAT TTCGCCACCG CCGACGATTT CGAGGCCCAC
GACGCGCTGC TGTGCATCGC CTCCGGCAAG CTGATCGCCG AGACCGATCG CGTCCAGCTC
ACGCCCGACC ACCGCTTCAA GACCCGCGCC GAAATGGCGG TGCTGTTCGC CGATTTGCCG
GAGGCGCTGG CCTCGACGGT CGAGATCGCG CAGCGCTGCG CCTATCGGCC GCTGACCCGC
AAGCCGATCC TGCCGCTGTT CACCGTCGGC GCCAGCGTCA ACGACGCCGA GGAGGCGGCC
GCCGCGGAAG CGGCCGAGCT GCGTCGCCAG GCCGAGCAGG GGCTCGCGGA CCGCATGCGC
GTCCACGGCC TGTCGCAGGG CATGACCGAA GAGGACTACC AGAAGCGCCT CGCCTTCGAA
CTCGACGTCA TCACCCGGAT GAAATACGCC GGCTACTTCC TGATCGTGTC GGACTTCATC
AAATGGGCCA AGGCCCACGG CATCCCGGTC GGGCCGGGCC GCGGCTCCGG TGCCGGCTCG
CTGGTGGCGT ATTCGCTGAC CATCACCGAC CTCGATCCGA TCCGCTTCGG TCTGCTGTTC
GAGCGCTTCC TCAATCCGGA ACGCGTCTCG ATGCCGGACT TCGACATCGA TTTCTGCCAG
GACCGCCGCG GCGAAGTGAT CGAATACGTC CAGCACCGTT ACGGCCGCGA CCAGGTCGCG
CAGATCATCA CCTTCGGCAC GCTGCAGGCG CGCGGCGTGC TGCGCGACGT CGGCCGCGTG
CTGCAGATGC CGTACGGCCA GGTCGACAAG CTGACCAAGC TGGTGCCGCA GAACCCGGCC
GCACCCGTGT CGCTGAAGCA GGCGATCGAA AGCGAGCCGA AGCTTCAGGC GTTTCGCGAC
GAGGACCCGG TCGTCGCCCG CGCCTTCGAC ATCGCGCAGA AGCTCGAGGG CCTGACCCGG
CACGCCTCGA CCCACGCCGC CGGCATCGTG ATCGGCGATC GGCCGCTGTC CGATCTGGTG
CCGATGTATC GCGATCCGAA ATCAGACATG CCGGTCACCC AGTTCAACAT GAAATGGGTC
GAGCCGGCGG GGCTGGTGAA GTTCGACTTC CTCGGCCTCA AGACGCTGAC GGTGCTCGAC
GTCGCGGTGA AGCTCTTGAA GCAGCGCGAC ATCCATATCG ATCTGGCGAC GCTGGGAATC
GAGGACCCGG TCAGCTATCA GATGCTGGCG CGCGGCGACG TGGTCGGCGT GTTCCAGGTT
GAAAGCCAGG GCATGCGGCG TGCGCTGGTG GACATGCGCC CCGACCGCTT CGAGGACATC
ATCGCGCTGG TCGCGCTGTA TCGCCCGGGC CCGATGGCGA ACATTCCGAC CTATTGCGCC
CGCAAACACG GCGACGAGGA GTCGGAATAT CTGCATCCGA TGCTGGAGCC GATCCTGAAG
GAGACCTTCG GCGTCATCAT CTACCAGGAA CAGGTGATGC AGATCGCCCA GGTGATGGCC
GGCTATTCGC TCGGCGAAGC CGACCTGCTG CGCCGCGCGA TGGGCAAGAA GATCCGCGCC
GAGATGGAGA AGCAGCGTGC CATCTTCGTC GAGGGCGCGA CCAAGAACGG TGTGCCGAAG
GACTCCGCCG ACACCATCTT CGATCTGTTG GCGAAATTCG CCGACTACGG CTTCAACAAG
AGCCACGCCG CCGCCTATGC GCTGGTGTCC TATCACACCG CCTACATGAA GGCGCATTAT
CCGGTCGAAT TCATCGCGGC GTCGATGACG CTCGACCTCA ACAACACCGA CAAGCTGTCG
GAATTCCGCG CCGAGGCGCA GCGGCTCGGC ATCAAGGTCG AGGCGCCGTC GGTCAATCGC
TCCGGCCCGA CCTTCGAGGT CGGCGCCAAC ACCATCTACT ACGCGCTCGC CGGCCTGAAA
GGCGTCGGCC TGCAGGCGGT GCAGATGATC GTCGAGGCGC GCGGCGACAA GCCGTTCGCC
TCGCTCGCGG ATTTCGCAGC GCGGGTCAAT CCGCGCGCGA TCAACAAGCG GGTGATCGAA
AGCCTCGCGG CCGCCGGCGC GTTCGATTGT CTCGACAGTA ATCGCGCGCG GGTGTTCGCC
GGCGCCGACG CGATCATCGC CGCCTGCCAG CGCAGCCACG AGGCCGCGAC CTCAGGCCAG
AACGACATGT TCGGCGGGCT CGCCGACGCG CCGCAGGTGG TGCTGCCGCA GATCGAGCCG
TGGCTGCCGG CGGAGCGGCT GCGGCGCGAA TACGACGCGA TCGGCTTCTT CCTGTCCGGC
CACCCGCTCG ACGATTACGC CACCGCGCTG AAGCGGCTGC GGGTGCAGTC CTGGGCGGAA
TTCTGCAAGG CGGTGAAATC CGGCGCCACC GCCGGCAAGG TCGCCGCCAC CGTGGTGTCG
CGGATGGAGC GGCGCACCAA GACCGGCAAC AAGATGGGCA TCATGGGCCT GTCCGACCCG
ACCGGGCATT TCGAGGCGGT GCTGTTCTCC GAGGGGCTCG CGCAATATCG CGACGTGCTG
GAGCCGGGCG CCGCGGTGCT GCTGCAACTC GGCGCCGAAC TGCAGGGCGA GGACGTTCGC
GCCCGCGTGC TGCACGCCGA GCCGCTCGAC GCCGCCGCCG CCAAGACCCA GAAGGGGCTG
CGGATCTTCC TGCGCGACAC CAAGCCGCTC GATTCGATCA CGAAGCGGCT GCAGCCGCCG
GAATCGAAGG TCTCGGGGGG CAATATCGCG CTGGTGCTGA GGCTCGATCC GCACACCGAG
GTCGAATTCG AGTTGCCGGG CCGGTTTCAG GTTTCGCCGC AGATCGCCGG CGCGATCAAG
GCGGTCACCG GCGTGGAACT GGTCGAGACG CTGTAA
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| Protein sequence | MSQAGFVHLH VHSAYSLLKG SMKIARLADL AKADHQPALA LTDTDNMFGA LEFSDKLAGS
GIQPIVGLEL GIDFGDQDPT SRNAALAAPA RVVLLATRER GYRSLMRLNS RAFLETPVNQ
PPHIKFDWLD GETDDVIALT GGPEGPISLA MLTDPALGRL RCERLAQAFG DRLYVELQRH
NTDVERRAEA GLIDIAYDMG LPLVATNEPH FATADDFEAH DALLCIASGK LIAETDRVQL
TPDHRFKTRA EMAVLFADLP EALASTVEIA QRCAYRPLTR KPILPLFTVG ASVNDAEEAA
AAEAAELRRQ AEQGLADRMR VHGLSQGMTE EDYQKRLAFE LDVITRMKYA GYFLIVSDFI
KWAKAHGIPV GPGRGSGAGS LVAYSLTITD LDPIRFGLLF ERFLNPERVS MPDFDIDFCQ
DRRGEVIEYV QHRYGRDQVA QIITFGTLQA RGVLRDVGRV LQMPYGQVDK LTKLVPQNPA
APVSLKQAIE SEPKLQAFRD EDPVVARAFD IAQKLEGLTR HASTHAAGIV IGDRPLSDLV
PMYRDPKSDM PVTQFNMKWV EPAGLVKFDF LGLKTLTVLD VAVKLLKQRD IHIDLATLGI
EDPVSYQMLA RGDVVGVFQV ESQGMRRALV DMRPDRFEDI IALVALYRPG PMANIPTYCA
RKHGDEESEY LHPMLEPILK ETFGVIIYQE QVMQIAQVMA GYSLGEADLL RRAMGKKIRA
EMEKQRAIFV EGATKNGVPK DSADTIFDLL AKFADYGFNK SHAAAYALVS YHTAYMKAHY
PVEFIAASMT LDLNNTDKLS EFRAEAQRLG IKVEAPSVNR SGPTFEVGAN TIYYALAGLK
GVGLQAVQMI VEARGDKPFA SLADFAARVN PRAINKRVIE SLAAAGAFDC LDSNRARVFA
GADAIIAACQ RSHEAATSGQ NDMFGGLADA PQVVLPQIEP WLPAERLRRE YDAIGFFLSG
HPLDDYATAL KRLRVQSWAE FCKAVKSGAT AGKVAATVVS RMERRTKTGN KMGIMGLSDP
TGHFEAVLFS EGLAQYRDVL EPGAAVLLQL GAELQGEDVR ARVLHAEPLD AAAAKTQKGL
RIFLRDTKPL DSITKRLQPP ESKVSGGNIA LVLRLDPHTE VEFELPGRFQ VSPQIAGAIK
AVTGVELVET L
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