| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2586 |
|---|
| Symbol | |
|---|
| ID | 3910378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2967377 |
|---|
| End bp | 2968894 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637884486 |
|---|
| Product | NADH dehydrogenase subunit M |
|---|
| Protein accession | YP_486200 |
|---|
| Protein GI | 86749704 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
|---|
| TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.277846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.933861 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCTT CAATCATGAC CTGGCCGGTG CTGTCGGTCG TCACCTTCCT GCCGCTGGTC
GGCGCGGCGC TGGTCTATCT CGCTCGCGGC GATGACGAGG CGGCGCGCCG CAATGCGCGC
TGGATCTCGC TGTGGACTAC GCTGATCACC TTCGCGGTGT CGCTGATCCT GGTCTGGCGC
TTCGACGCCG CCGACCCGGG CTTCCAGTTC GTCGAGAAGG CGCCGTGGCT CGGCGCCACC
ATCGCCTTTC ACATGGGCGT CGACGGCATT TCGCTGCCGT TCGTGATCCT GACCACCGCG
CTGATGCCGT TCTGCATCCT CGCGAGCTGG AAGTCCATCA CGGTGCGGGT GCGCGAATAC
ATGATGGCGT TTCTGGTGCT GGAAACGCTG ATGATCGGTA CCTTCTCGGC GCTCGACCTG
GTGCTGTTCT ATCTGTTCTT CGAAGGCGGC CTGATCCCGA TGTTCCTGAT CATCGGCGTC
TGGGGCGGCC CGCGCCGGGT GTACGCATCG TTCAAGTTCT TCCTCTACAC GCTGCTCGGC
TCGGTGCTGA TGCTGCTGGC GATCATGGCG CTGTACTGGA CGGCGGGCAC CACTGACATC
CCGACGCTGA TGACCACCGC GATCCCGCGC AACCTGCAGA CCTGGGCGTG GCTGGCGTTC
TTCGCCTCGT TCGCGGTCAA GATGCCGATG TGGCCGGTGC ACACCTGGCT GCCGGATGCG
CATGTCGAGG CGCCGACCGC GGGCTCCGTG GTGCTCGCCG CGATCATGCT GAAGATGGGC
GGCTACGGCT TCCTGCGATT CTCGCTGCCG ATGTTCCCGG ATGCCTCGGT GTATTTCGCA
CCGCTGGTGT TCAGCCTGTC GGTGATCGCG ATCGTCTATA CGTCGCTGGT CGCGCTGATG
CAGGAGGATA TCAAGAAGCT GATCGCGTAC TCCTCGGTCG CGCATATGGG CTTCGTCACC
ATGGGCATCT TCGCCGGCAA CACCCAGGGC GTCGCCGGCA GCGTGTTTCA GATGATCTCG
CACGGCATCG TGTCGGGCGC GCTGTTCCTC TGCGTCGGCG TGATCTACGA CCGCATGCAC
ACCCGCGAGA TCGCGGCCTA TGGCGGCCTC GTCAACCGGA TGCCGATCTA CGCCTTCGTG
TTCCTGGTGT TCACCATGGC CAATGTCGGC CTGCCGGGCA CCTCGGGCTT CGTCGGCGAG
TTCCTGACGC TGCTCGGCAC CTTCCGCGTC AACGTGCCCA CCGCGACCAT CGCCACGCTC
GGCGTGATCC TGTCGGCGGC CTATGCGCTG TGGCTCTACC GCAAGGTGGT GTTCGGCGCG
TTGACCAAGC CGGCGCTGGC CGACATCAAG GACCTGACCT GGCGGGAGGG GATCATCCTG
GCGCCGCTGG TGGTGCTCAC CATTCTGTTC GGCTTCTATC CGAAGCCGGT GCTGGACATG
TCGGCCGCCT CGGTCCAGCA ACTCGTCAAC AATTACGCCG CCGCCGTGAC TGCCGTGAAG
GCAGCCGCGC TTCCGTAA
|
|---|
| Protein sequence | MSASIMTWPV LSVVTFLPLV GAALVYLARG DDEAARRNAR WISLWTTLIT FAVSLILVWR
FDAADPGFQF VEKAPWLGAT IAFHMGVDGI SLPFVILTTA LMPFCILASW KSITVRVREY
MMAFLVLETL MIGTFSALDL VLFYLFFEGG LIPMFLIIGV WGGPRRVYAS FKFFLYTLLG
SVLMLLAIMA LYWTAGTTDI PTLMTTAIPR NLQTWAWLAF FASFAVKMPM WPVHTWLPDA
HVEAPTAGSV VLAAIMLKMG GYGFLRFSLP MFPDASVYFA PLVFSLSVIA IVYTSLVALM
QEDIKKLIAY SSVAHMGFVT MGIFAGNTQG VAGSVFQMIS HGIVSGALFL CVGVIYDRMH
TREIAAYGGL VNRMPIYAFV FLVFTMANVG LPGTSGFVGE FLTLLGTFRV NVPTATIATL
GVILSAAYAL WLYRKVVFGA LTKPALADIK DLTWREGIIL APLVVLTILF GFYPKPVLDM
SAASVQQLVN NYAAAVTAVK AAALP
|
|---|
| |