| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2418 |
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| Symbol | |
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| ID | 3909552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 2769863 |
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| End bp | 2772214 |
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| Gene Length | 2352 bp |
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| Protein Length | 783 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637884317 |
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| Product | exoribonuclease R |
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| Protein accession | YP_486034 |
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| Protein GI | 86749538 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0155442 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.184337 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAAGA CGCGCGACGA CAAGTTCCCG GACAAGGCCA CGCTCCTCGC CTTTATCCGC
GCGCATCCCG GCAAGGTCGG CACCCGCGAG ATCGCCCGCG AGTTCGGCCT GAAGAATGCC
GATCGTGCCG AACTGAAGCG CCGTCTCAAG GAACTGTCCG ACGACGGCGC GATCCGCAAG
AGCGGCCGCC GCAAGGTCGC CGAGCCGGCC ACCCTGCCCC CGACGCTGTT GGCGGATATC
ACCGCGCGCG ATAGCGACGG CGAACTGATC GCCACCCCGT CTGAATGGGA CGAGCAGGAC
GGCGAGCCGC CGAAGATCCG CATCCACACC CCGCGCCGGC CCAAGCCCGG CACCGCCGCC
GGCCTCGGCG ACCGCGCGCT GCTGCATGTC GAGCCGGCCG AGGCGCCCGA GCAAGGTCCC
GCTTATGTCG GCCGCGTCAT TCGCGTGCTC GATCGCGGCA AGCCGCGCAT TCTGGGGATT
TTTCGCGCCA CGCCGCAGGG CGGCGGCCGG CTTGTCCCGG TCGACAAGAA GCAGGCCGGG
CGCGAACTCA ACATCGCGCC GCACGATGCC GGCGGCGCGC AGGACGGCGA CCTCGTCAGC
GTCGACCTGA TCCGCAGCCG CGGCTATGGC CTGTCGTCCG GCCGCGTCAA GGAACGGCTC
GGCTCGCTCG CGACCGAAAA AGCCGTCAGC CTGATCGCAA TCCACTCCCA CGACATCCCG
CAGGAATTCT CGACGACCGC GTTGCGCGAA TCCGAAGCCG CCGAGCCGGC GACGCTGAAG
GGCCGCGAGG ACTGGCGCGA GCTGCCGCTG GTGACGATCG ATCCGCCCGA CGCCAAGGAC
CACGACGACG CGGTCCACGC CGAGCCGGAT CCCGACCCCA ACAACAAAGG CGGCGTGATC
CTGCACGTCG CGATCGCCGA CGTCGCCTAC TACGTGCGGC CGGACTCGGC GCTCGATCGC
GACGCGCTAC GGCGCGGCAA TTCGGTGTAC TTCCCCGACC GCGTCGTGCC GATGCTGCCG
GAGCGGATTT CCAACGATCT GTGCTCGCTG AAGCCCGGCG AGCCCCGCGG CGCTCTCGCG
GTCCGCATGG TGATCGGCGC CGACGGCCGC AAGCGCTCGC ATTCGTTTCA TCGCGTGCTG
ATGCGCTCGG CCGCGAAGCT GAACTACGCG CAGGCCCAGG CCGCGATCGA CGGCCGGCCC
GACGACACCA CCGGCCCGCT GCTCGACACG ATTTTGAAGC CGCTCTACGA CGCCTATGCG
ATCGTCAAGC GCGGCCGCGA CGAGCGCGAT CCGCTCGATC TCGATCTGCC CGAGCGCAAG
ATCATCCTGA AGCCCGACGG CACCGTCGAC CGCGTCATCG TTCCGGAGCG GCTCGACGCG
CATAAATTGA TCGAGGAATT CATGATCCTC GCCAACGTCG CCGCGGCCGA GATGCTCGAA
AAGAAAGCGC TGCCGCTGAT CTATCGGGTG CACGACGAAC CGAGCGTGGA GAAGGTCCAC
AACCTCGTCG ACTTCCTGAA GACGCTGGAT CTGTCCTTCG CCAAGGGCGG AGCGCTGAAG
CCGGCGCAGT TCAACCGCAT CCTGGCGATG GTCAAAGGCG AAGACGCCGA GCCGCTGGTC
AACGAAGTGG TGCTGCGCTC GCAGGCGCAG GCCGAATATG CCTCCGAGAA TTACGGCCAT
TTCGGCCTGA ACCTGCGCCG CTACGCGCAT TTCACCTCGC CGATCCGCCG CTACGCCGAT
CTCGTGGTGC ACCGCGCGCT GATCCGCGCG CTCAACCTCG GCGACGGCGC GCTGCCGCAG
ACCGAGACGG TGGAAACGCT GGCCGAAGTC GCAGCCCAGA TCTCACTGAC CGAACGCCGC
GCGATGAAGG CCGAGCGCGA GACGGTCGAC CGGCTGATCG CGCATCACCT CGCCGACCGC
ATCGGCGCGA CCTTCCAGGG CCGCGTCTCC GGCGTCACCA AGGCCGGCCT GTTCGTCAAG
CTGAGCGACA CCGGCGCCGA CGGACTGATT CCGATCCGCA CGCTCGGCGA CGAGTATTAC
AACTACGACG AAACCCGCCA CGCGCTGATC GGCTCGCGCA GCGGTGCCAT GCATCGGCTG
GGGGACGTCG TCGACGTCCG TCTGGTAGAA GCAGCCCCTG TGGCTGGCGC GTTGCGGTTC
GAGCTATTAA GTGAATCGCG AAGCGTCGCG CGCGGGCCAC GCAAGGGAGC GTACAAGGGT
CGCGCCAAGG CGGTGGAACC GGCAAAGGGC GGCGCCAAAA TCGGGCGCAG CGCGCGAAGC
AAGGCCGGCA AGCCGAAGGC TGCGAAGCCG TCGAAGCGCA AGGCGAACAA GCCCGGAAAG
GGAACGCGAT GA
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| Protein sequence | MSKTRDDKFP DKATLLAFIR AHPGKVGTRE IAREFGLKNA DRAELKRRLK ELSDDGAIRK
SGRRKVAEPA TLPPTLLADI TARDSDGELI ATPSEWDEQD GEPPKIRIHT PRRPKPGTAA
GLGDRALLHV EPAEAPEQGP AYVGRVIRVL DRGKPRILGI FRATPQGGGR LVPVDKKQAG
RELNIAPHDA GGAQDGDLVS VDLIRSRGYG LSSGRVKERL GSLATEKAVS LIAIHSHDIP
QEFSTTALRE SEAAEPATLK GREDWRELPL VTIDPPDAKD HDDAVHAEPD PDPNNKGGVI
LHVAIADVAY YVRPDSALDR DALRRGNSVY FPDRVVPMLP ERISNDLCSL KPGEPRGALA
VRMVIGADGR KRSHSFHRVL MRSAAKLNYA QAQAAIDGRP DDTTGPLLDT ILKPLYDAYA
IVKRGRDERD PLDLDLPERK IILKPDGTVD RVIVPERLDA HKLIEEFMIL ANVAAAEMLE
KKALPLIYRV HDEPSVEKVH NLVDFLKTLD LSFAKGGALK PAQFNRILAM VKGEDAEPLV
NEVVLRSQAQ AEYASENYGH FGLNLRRYAH FTSPIRRYAD LVVHRALIRA LNLGDGALPQ
TETVETLAEV AAQISLTERR AMKAERETVD RLIAHHLADR IGATFQGRVS GVTKAGLFVK
LSDTGADGLI PIRTLGDEYY NYDETRHALI GSRSGAMHRL GDVVDVRLVE AAPVAGALRF
ELLSESRSVA RGPRKGAYKG RAKAVEPAKG GAKIGRSARS KAGKPKAAKP SKRKANKPGK
GTR
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