Gene RPB_2404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_2404 
Symbol 
ID3909538 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand- 
Start bp2757609 
End bp2758682 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content63% 
IMG OID637884303 
ProductK+-dependent Na+/Ca+ exchanger related-protein 
Protein accessionYP_486020 
Protein GI86749524 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0530] Ca2+/Na+ antiporter 
TIGRFAM ID[TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein
[TIGR00378] calcium/proton exchanger (cax) 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.232463 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.497103 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGACCC TGCTCAGTTT TCTGTTGGGA CTTGTCGCTC TTGTCGTCGG CGCAGAATTG 
CTGGTCCGAG GGGCCTCCAA ACTGGCGCTC ACGTTCGGAA TATCGCCGCT GGTGGTCGGC 
CTGACGGTGG TGGCCTTCGG TACCAGCTCT CCGGAACTGG CGGTCTCGAT TCAGGCGGCG 
ATGTCGAACC AGGCCGACAT TACGATCGGC AATGTCGTCG GCAGCAACAT TCTGAATGTG 
CTCTTCATCC TCGGTCTGTC GGCGCTCATC ACGCCGTTGA TCGTCAACCG ACAACTGATC 
CGCCAGGAGG TTCCGATCAT GGTCGGAGCA TCCTTGCTGC TGGCCGCGCT GGCGTGGGAT 
GGCAATCTGT CGCGCGTGGA CGGATTGATC CTGATAGGCC TCATGGCCGC CTATACGGCA 
TTCCTGATCG TGCAGAGCCG TCGTCAGGAA ACGGCCTCGG ATGAGGCGGC ACCGACCACC 
GCCGACGCGG GAACGGGGTG GGACTCGAAG CTGCCGGTGC AAATCGCGCT GATCATCGTA 
GGCCTAATCT TGCTGGTGAT CGGCGCGACC TTTCTGGTCG AGGCGGCCGT CACGTTCGCG 
AAACTGTTCG GCGTCAGCGA AATGGTGATC GGTCTGACCA TCGTCGCGGC GGGCACCTCG 
CTGCCCGAGG TCGCGACCTC GATCATGGCG GCCATCCGCG GTCAGCGCGA CATCGCCGTC 
GGCAATGTGG TGGGCAGCAA CACCTTCAAC ATTCTCGGCG TGCTCGGCCT GTCCGCCGGG 
GTGGCGCCGG ACGGCCTTAA TATCGCTCCG GCCATGATGG CGTTCGATAT CCCGGTGATG 
GTCGCGGTGG CGATTGCCTG CCTGCCGATC TTCTTCACCG GCAGCCTGAT CGCCAGGTGG 
GAAGGCGGGC TGTTTCTGGC GCTCTACGTC GCCTACACCG TTTACCTGGT GATGGCGGCA 
CAGCAGCACG ACGGACTCTC GACCTATGGC TTCGTCCTCG GCACCGTCGT TCTTCCGCTG 
TGCGGGTTGA CCCTTGTCGT CATCAGTTGG CGTGAATGGC GTGCCCGACA CTAA
 
Protein sequence
MLTLLSFLLG LVALVVGAEL LVRGASKLAL TFGISPLVVG LTVVAFGTSS PELAVSIQAA 
MSNQADITIG NVVGSNILNV LFILGLSALI TPLIVNRQLI RQEVPIMVGA SLLLAALAWD 
GNLSRVDGLI LIGLMAAYTA FLIVQSRRQE TASDEAAPTT ADAGTGWDSK LPVQIALIIV 
GLILLVIGAT FLVEAAVTFA KLFGVSEMVI GLTIVAAGTS LPEVATSIMA AIRGQRDIAV 
GNVVGSNTFN ILGVLGLSAG VAPDGLNIAP AMMAFDIPVM VAVAIACLPI FFTGSLIARW 
EGGLFLALYV AYTVYLVMAA QQHDGLSTYG FVLGTVVLPL CGLTLVVISW REWRARH