| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2323 |
|---|
| Symbol | |
|---|
| ID | 3908954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2671433 |
|---|
| End bp | 2672824 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637884220 |
|---|
| Product | peptidase S1C, Do |
|---|
| Protein accession | YP_485939 |
|---|
| Protein GI | 86749443 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.052989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.164438 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCTG TCCGCATCTT CACGGCCGTC CTGCTCTCGC TCGCGGCGTC GGCCCCGGCG
ACCGCGCAGG AGCGGCGGCT GCCGGCGTCG CAGGCCGAGA TCAAGCTCAG CTACGCGCCG
ATCGTGCAGC ACGCGCAGCC GGCGGTGGTG AACGTCTACG CCGCCAAGGT GGTGCAGAAC
CGCAATCCGC TCTTGGAAGA CCCGATCTTC CGCCGCTTCT TCGGCGGCGG CCCGCAGCCC
GAGCAGATCC AGCGCTCGCT CGGAAGCGGC GTGATGGTCG ATCCGTCGGG CCTCGTCGTC
ACCAACAATC ACGTCATCGA CGGCGCCGAT CAGGTCAAGG TCGCGCTCGC CGACAAGCGC
GAGTTCGAGG CCGAGATCGT GCTGAAGGAC AGCCGCACCG ATCTCGCGGT GCTGCGCCTC
AAGGATACCA GGGAGAAATT CGCCACCCTC GAACTGGCCA ATTCGGACGA GCTGCTGGTC
GGCGATCTGG TGCTGGCGTT GGGCAATCCG TTCGGCGTCG GCCAGACCGT GACGCACGGC
ATCGTCTCGG CGCTGGCGCG CACCCAGGTC GGCATCACCG ACTATCAGTT CTTCATCCAG
ACCGACGCGG CGATCAATCC CGGCAATTCC GGCGGCGCGC TGGTCGACAT GACCGGCAAG
CTGGTCGGCA TCAACACCGC GATCTTTTCG CGCTCCGGCG GCTCGCAGGG CATCGGCTTC
GCGATCCCGA CCAACATGGT GCGGGTGGTG ATCGCCTCGG CCAAGAGCGG CGGCAAGGCG
GTGAAGCGGC CGTGGCTCGG CGCGCGGCTG CAGGCGGTGA CGCCGGAGAT CGCCGAGACG
CTCGGTCTGA AGCGGCCCAG CGGCGCGCTG GTGGCGAGCG TCACCAAGGG CAGCCCGTCC
GACAAGGCGG GGCTGAGACT GTCCGATCTG ATCGTCGGGG TCGACGGCTT TGCGATCGAT
GATCCCAACG CGTTCGACTA TCGCTTCGCC ACCCGCCCGC TCGGCGGCAC CGCGCAGATC
GACGTGCAGC GCGGCGGCAA GCCGCTCAAG CTCAGCATCA CGCTGGAGAC CGCGCCGGAC
ACCGGCCGCG ACGAGATCGT GCTGACCGCG CGCTCGCCGT TCCAGGGTGC CAGGATCGCC
AACATCTCGC CGGCGATCGC CGACGACCTG CGGCTCGACC CCAGCGTCGA GGGCGTGGTC
GTGACCGATC TCGCCGACGG CGCCACCGCG GCGAGCGTCG GTTTCCAGAA GGGCGACATC
ATCGTCGCGG TCAACAACAA GCGCATCGGC AAGACCAGCG ACCTCGAACG CATCACCAAC
GAGTCGTTCC GCCTGTGGCG CATCACCGTC GTTCGCGGCG GCCAGCAGAT CAACGTCACG
CTCGGCGGAT GA
|
|---|
| Protein sequence | MSAVRIFTAV LLSLAASAPA TAQERRLPAS QAEIKLSYAP IVQHAQPAVV NVYAAKVVQN
RNPLLEDPIF RRFFGGGPQP EQIQRSLGSG VMVDPSGLVV TNNHVIDGAD QVKVALADKR
EFEAEIVLKD SRTDLAVLRL KDTREKFATL ELANSDELLV GDLVLALGNP FGVGQTVTHG
IVSALARTQV GITDYQFFIQ TDAAINPGNS GGALVDMTGK LVGINTAIFS RSGGSQGIGF
AIPTNMVRVV IASAKSGGKA VKRPWLGARL QAVTPEIAET LGLKRPSGAL VASVTKGSPS
DKAGLRLSDL IVGVDGFAID DPNAFDYRFA TRPLGGTAQI DVQRGGKPLK LSITLETAPD
TGRDEIVLTA RSPFQGARIA NISPAIADDL RLDPSVEGVV VTDLADGATA ASVGFQKGDI
IVAVNNKRIG KTSDLERITN ESFRLWRITV VRGGQQINVT LGG
|
|---|
| |