| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2285 |
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| Symbol | rpoB |
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| ID | 3909666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2634354 |
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| End bp | 2638526 |
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| Gene Length | 4173 bp |
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| Protein Length | 1390 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637884182 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_485901 |
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| Protein GI | 86749405 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0576876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.366235 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGC AGACGTTCAC CGGTCGCAAA CGCGTTCGCA AGTTCTTCGG TCACATCCGG
GAAGTCGCCG AGATGCCGAA CCTCATCGAG GTTCAGAAGG CGTCTTACGA CCAGTTCCTG
ATGGTCGCCG AGCCTCCCGG AGGCCGCGAC GACGAGGGCC TGCAGGCGGT GTTCCGGTCG
GTGTTTCCGA TCTCGGACTT CTCCAACGCC TCGATGCTGG AATTCGTTCG CTACGAATTC
GAGCCGCCGA AATACGACGT CGACGAATGC CGCCAGCGCG GCATGACCTA TGCCGCGCCG
CTGAAGGTGA CGCTGCGCCT GATCGTGTTC GATATCGATG AGGAAACCGG CGCCCGTTCG
GTCAAGGACA TCAAGGAGCA GGACGTCTAC ATGGGCGACA TTCCGCTCAT GACGATGAAC
GGCACCTTCG TGGTCAACGG CACCGAGCGC GTCATCGTCT CGCAGATGCA CCGCTCGCCG
GGCGTGTTCT TCGATCACGA CAAGGGCAAG ACCCATTCGT CGGGCAAGCT GCTGTTCGCC
GCCCGCGTCA TCCCGTATCG CGGCTCCTGG CTCGACATCG AGTTCGACGC CAAGGACATC
GTGTTCGCGC GTATCGACCG TCGCCGCAAG ATTCCGGTGA CGTCGCTGAT GTTCGCGCTC
GGGCTCGACG GCGAAGAGAT CCTGTCGACG TTCTACAACA AGATCCTCTA CAAGCGCACC
AAGGAAGGCT GGCGCGTGCC GTTCGACGCC AGCCGCTTCC GCGGCTACTC GACCGTCAAC
GACCTGATCG ACGCCGACAC CGGCAAGGTC GTGCTCGAGG CCGGCAAGAA GCTGACCGTG
CGCGCGGCGC GACAGCTGCA GGAGAAGGGC CTCAAGGCGC TGCGGCTGTC CGACTCCGAG
CTGGTCGGCA ACTACCTGGC CGAAGATCTC GTCAACCCCA AGACCGGCGA GATCTTCGCC
GAAGCCGGTG ACGAACTGAC CGGCAAGCCG ATCAAGGGCG ACGACAAGGA AATCGAGCTG
TTCGTCGGCG CCACGCCGAT GAAGGCGATC TTGGAGCAGG GCTACAAGGA ACTGCCGCTG
CTCGACATCG ACCACGTCAA TGTCGGCCCC TACATCCGCA ACACGCTTTC GGCCGACAAG
AACATGACGC GCGAAGACGC GCTGTTCGAT ATCTACCGGG TGATGCGCCC GGGCGAGCCG
CCGACGCTCG ACTCCGCGCA GAACATGTTC CAGTCGCTGT TCTTCGACGC CGAGCGCTAC
GACCTGTCCG CGGTCGGTCG CGTCAAGATG AACATGCGCC TCGACCTCGA TGCGCCCGAC
ACCCATCGCA CGCTGCGCAA GGAAGACATC CTCGCGGTGA TCAAGACCCT GGTCGGTCTG
CGCGACGGCA AGGGCGAGAT CGACGACATC GACCATCTCG GCAACCGCCG CGTGCGCTCG
GTCGGCGAGC TGATGGAGAA TCAGTACCGC ATCGGCCTGC TGCGCATGGA GCGCGCCATC
AAGGAGCGGA TGTCGTCGGT CGATATCGAC ACGGTGATGC CGCAGGACCT GATCAACGCC
AAGCCGGCGG CCGCCGCGGT GCGCGAGTTC TTCGGTAGCT CGCAGCTGTC GCAGTTCATG
GACCAGACCA ATCCGCTGTC GGAGATCACC CACAAGCGCC GCCTCTCGGC GCTCGGCCCG
GGCGGTCTGA CCCGCGAACG CGCCGGCTTC GAAGTCCGCG ACGTGCATCC GACCCATTAC
GGCCGGATCT GCCCGATCGA GACGCCGGAA GGTCCGAACA TCGGTCTGAT CAACTCGCTC
GCGACCTTCG CGCGCGTCAA CAAATACGGC TTCGTCGAGA CCCCGTATCG CAAGGTCAAG
GAAGGCCGCG TCACCGACGA GGTGGTGTAT CTGTCGGCGA TGGAAGAGGG CCGCTACGCG
GTCGCTCAGG CCAACATCTC GCTCGACGCC AAGGGCCGCT TCACGGACGA TCTCATTGTG
TGCCGCGCAG GCGGGACGCG TGACGTCGTG CTGATCCCGG CCGACCAGGT CGACTACATG
GACGTGTCGC CGAAGCAGCT CGTTTCGGTC GCCGCGGCGC TGATCCCGTT CCTCGAGAAC
GACGACGCCA ACCGCGCGCT GATGGGCTCG AACATGCAGC GCCAGGCGGT GCCGCTGGTT
CGCGCCGAGG CGCCGTTCGT CGGCACCGGC ATGGAAGGCG TGGTCGCGCG CGATTCGGGC
GCGGCGATCG CCGCGCGCCG CACCGGCGTG ATCGACCAGA TCGACGCCAC CCGTATCGTC
ATCCGCGCCA CCGAGGATCT CGATCCGACC AAGTCGGGCG TCGATATCTA CCGGCTGATG
AAGTACCAGC GCTCCAACCA GTCGACCTGC ATCAACCAGC GCCCGCTGGT GAAGGTCGGC
GACAAGGTGG CCAAGGGTGA CATCATCGCG GACGGTCCGT CGACCGACCT CGGCGAACTC
GCGCTCGGCC GCAATGTGCT GGTCGCGTTC ATGCCGTGGA ACGGCTACAA CTTCGAAGAT
TCGATCCTGC TCTCCGAGCG GATCGTGAAG GAAGACGTCT TCACCTCGAT CCACATCGAG
GAATTCGAAG TGATGGCCCG CGACACCAAG CTCGGCCCCG AGGAAATCAC CCGCGACATT
CCGAACGTCT CGGAAGAAGC GCTGAAGAAC CTCGACGAAG CCGGCATCGT CTATATCGGC
GCCGAAGTCC GCGCCGGCGA CATCCTGGTC GGCAAGATCA CGCCGAAGGG CGAAAGCCCG
ATGACGCCGG AAGAAAAGCT GCTGCGCGCC ATCTTCGGCG AAAAGGCCTC GGACGTCCGC
GACACCTCGC TGCGGGTGCC GCCGGGCGTG CAGGGCACCA TCGTCGAAGT CCGCGTCTTC
AACCGGCACG GCGTCGACAA GGACGAGCGC GCGCTGGCGA TCGAGCGGGA AGAGATCGAA
CGCCTCGCCA AGGACCGCGA CGACGAGCAG GCGATTCTCG ACCGTAACGT CTACGGCCGT
CTCGCCGACC TGCTCGACAA CCGCCAGGGC GTCGCCGGTC CCAAGGGCTT CAAGAAGGAC
ACCAAGATCA CCCGCGCGGT GCTCGAAGAA TATCCGAAGT CGCAATGGTG GCTGTTCGCC
TCGCCGAACG ACAAGCTGAT GGCCGAAATC GAGGCCATGC GGAAGCAATA CGACGAGTCG
AAGAAGGGCC TCGAACAGCG CTTCCTCGAC AAGGTCGAGA AGCTGCAGCG CGGCGACGAA
TTGCCGCCCG GCGTGATGAA GATGGTCAAG GTCTTCGTCG CGGTGAAGCG CAAGATCCAG
CCTGGTGACA AGATGGCCGG CCGCCACGGC AACAAGGGCG TGGTGTCGAA GATCGTGCCG
ATCGAGGACA TGCCGTTCCT CGAAGACGGC ACCCATGCCG ACATCGTGCT CAACCCGCTC
GGCGTGCCGA GCCGCATGAA CGTCGGTCAG ATCCTCGAGA CCCATCTCGG CTGGGCTTGC
GCCGGCATGG GCAAGAAGAT CGGCCAGACC ATCGACGCCT ATTATCAGAG GCAGGATCTC
AAGCCGCTGC GCGAGACCCT GAAGAAGATC TACGGCGACG ACGAGACCAT CAAGTCGCTC
GACGACGGCG AACTGATCGA GCTCGGCCGC AACCTCAGCC ACGGTGTCCC GATCGCCACG
CCGGTGTTCG ACGGCGCCAA GGAAGCGGAC ATCGAGGAGA TGCTGAAGCT CGCGGGCTTC
GACGCCTCCG GCCAGTCGAC CGTCTATGAC GGCCGCACCG GCGACGAGTT CGATCGCAAG
GTCACGGTCG GCTACATCTA CATGCTGAAG CTGCACCATC TTGTCGACGA CAAGATCCAC
GCCCGGTCGA TCGGTCCGTA CTCGCTCGTC ACCCAGCAGC CGCTGGGCGG CAAGGCGCAG
TTCGGCGGCC AGCGCTTCGG CGAAATGGAA GTGTGGGCGC TCGAAGCTTA CGGCGCCGCC
TACACGCTGC AGGAAATGCT GACGGTGAAG TCCGACGACG TCGCCGGCCG CACCAAGGTG
TACGAAGCGA TCGTGCGCGG CGACGACACG TTCGAGGCCG GTATCCCGGA ATCGTTCAAC
GTGCTCGTGA AGGAAATGCG CTCGCTCGGC CTCAACGTCG ACCTGCACAA TTCCAAGCTG
GGCGTGCCGC CCCCGGCCGA GGCGGCCGAG TAA
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| Protein sequence | MAQQTFTGRK RVRKFFGHIR EVAEMPNLIE VQKASYDQFL MVAEPPGGRD DEGLQAVFRS
VFPISDFSNA SMLEFVRYEF EPPKYDVDEC RQRGMTYAAP LKVTLRLIVF DIDEETGARS
VKDIKEQDVY MGDIPLMTMN GTFVVNGTER VIVSQMHRSP GVFFDHDKGK THSSGKLLFA
ARVIPYRGSW LDIEFDAKDI VFARIDRRRK IPVTSLMFAL GLDGEEILST FYNKILYKRT
KEGWRVPFDA SRFRGYSTVN DLIDADTGKV VLEAGKKLTV RAARQLQEKG LKALRLSDSE
LVGNYLAEDL VNPKTGEIFA EAGDELTGKP IKGDDKEIEL FVGATPMKAI LEQGYKELPL
LDIDHVNVGP YIRNTLSADK NMTREDALFD IYRVMRPGEP PTLDSAQNMF QSLFFDAERY
DLSAVGRVKM NMRLDLDAPD THRTLRKEDI LAVIKTLVGL RDGKGEIDDI DHLGNRRVRS
VGELMENQYR IGLLRMERAI KERMSSVDID TVMPQDLINA KPAAAAVREF FGSSQLSQFM
DQTNPLSEIT HKRRLSALGP GGLTRERAGF EVRDVHPTHY GRICPIETPE GPNIGLINSL
ATFARVNKYG FVETPYRKVK EGRVTDEVVY LSAMEEGRYA VAQANISLDA KGRFTDDLIV
CRAGGTRDVV LIPADQVDYM DVSPKQLVSV AAALIPFLEN DDANRALMGS NMQRQAVPLV
RAEAPFVGTG MEGVVARDSG AAIAARRTGV IDQIDATRIV IRATEDLDPT KSGVDIYRLM
KYQRSNQSTC INQRPLVKVG DKVAKGDIIA DGPSTDLGEL ALGRNVLVAF MPWNGYNFED
SILLSERIVK EDVFTSIHIE EFEVMARDTK LGPEEITRDI PNVSEEALKN LDEAGIVYIG
AEVRAGDILV GKITPKGESP MTPEEKLLRA IFGEKASDVR DTSLRVPPGV QGTIVEVRVF
NRHGVDKDER ALAIEREEIE RLAKDRDDEQ AILDRNVYGR LADLLDNRQG VAGPKGFKKD
TKITRAVLEE YPKSQWWLFA SPNDKLMAEI EAMRKQYDES KKGLEQRFLD KVEKLQRGDE
LPPGVMKMVK VFVAVKRKIQ PGDKMAGRHG NKGVVSKIVP IEDMPFLEDG THADIVLNPL
GVPSRMNVGQ ILETHLGWAC AGMGKKIGQT IDAYYQRQDL KPLRETLKKI YGDDETIKSL
DDGELIELGR NLSHGVPIAT PVFDGAKEAD IEEMLKLAGF DASGQSTVYD GRTGDEFDRK
VTVGYIYMLK LHHLVDDKIH ARSIGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA
YTLQEMLTVK SDDVAGRTKV YEAIVRGDDT FEAGIPESFN VLVKEMRSLG LNVDLHNSKL
GVPPPAEAAE
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