| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2239 |
|---|
| Symbol | |
|---|
| ID | 3909022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2563693 |
|---|
| End bp | 2566839 |
|---|
| Gene Length | 3147 bp |
|---|
| Protein Length | 1048 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637884134 |
|---|
| Product | hydrophobe/amphiphile efflux-1 HAE1 |
|---|
| Protein accession | YP_485855 |
|---|
| Protein GI | 86749359 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGTT TTTTCATCGA ACGGCCGGTG TTCGCATGGG TGATTGCGAT CACCATCATG
CTCGGCGGGC TGCTTGCGCT GCAGACGCTG CCGATCGCGC AATATCCCCA GATCGCCCCG
ACCACGGTGC GCATCACCGG GACCTATGCC GGCGCCGACG CGCAGACGGT GGAGAATTCG
GTCACCAAGG TGATCGAGCA GGGCATGACC GGGATCGACC ATCTCGACTA CATGACCTCG
ACCTCGACCT CCACCGGGCA GTCGCAGATC ACGCTGACCT TCACCGCCGC GGCCGATCCG
GACGTGGCGC AGATGCAGGT GCAGAACAAG CTCCAATTGG TGACCGCGCT TCTGCCGCAG
ATCGTCCAGA ACACCGGTCT CTCGGTCACG AAGTCCTCCA CCGGCTTCCT GATGGTGATC
GCCTTCGTTT CGACCGACGG CAAGCTGACA TCGATCGATC TCGCCGACTA CGTCAACAGC
ACGCTCAACG ATACGCTGAA GCGGATCGAA GGCGTCGGCG ACACCCAGTT GTTCGGCTCC
GGCTATGCGA TGCGGATCTG GCTCGATCCG GACAAGCTGG CGAAATACGC GCTGATGCCG
AGCAACGTCG CGACTGCAGT CGAGGCTCAG AACACCCAGG TCTCGGCCGG CCAGCTCGGC
GGTCTTCCAT CCCGCAAGGG GCAGCAGCTC AACGCCACGG TCACCGCGCG AAGCCGGCTA
CAGACCCCCG AGCAGTTTCG CAACATCATC CTGAAGAGCA CGACCGACGG CTCACTGGTG
CGCCTCAACG ACGTCGCCAC CGTTGAATTG GGCGCCGAGA GCTACACGAC GACGGCCGCC
TTCGACGGCA TGCCGGCCGC CGGTCTCGGC GTGAATCTCG CGACCGGCGC CAACGCCCTC
GATACCGCGA AGAACGTCCA GTCGACGATC TCCCGGCTGT CGGCGACGTT CCCGCAGGGC
GTCTCGGTGG TCTATCCCTA CGACACCACG CCGTTCGTTC GACTGTCGAT CGAGGAGGTC
GTGAAGACGC TGATCGAGGC GATCGCGCTG GTGTTCGTCG TGATGTTCGT GTTCCTGCAG
AACATCCGTG CCACTCTGAT TCCGACCATC GCCGTCCCTG TCGTGCTGCT CGGGACGGTC
GGTGTGCTGT CGGCGTTCGG CTATTCGATC AACACGTTGA CGATGTTCGC GATGGTGTTG
GCGATCGGGC TGCTGGTCGA CGACGCCATC GTCGTTGTCG AGAACGTCGA GCGGGTGATG
CAGGAAGAGG GGCTGTCGCC CAAGGAGGCG ACCCGCAAGT CGATGGACGA GATCACCGGC
GCGCTGGTCG GAATTGCCAC GGTGCTGTCG GCGGTGTTCA TCCCGATGGC GTTCTTCGGC
GGCTCTGTCG GTGTGATCTA CCGGCAATTC TCGGTGACCA TCGTCACGGC GATGGTGCTG
TCGGTGATCA CCGCCCTGGT CCTGACGCCG GCGCTGTGCG CGACGATCCT GCGACCGCCG
CAGGCCCATG CGACCGGCAA AGGGCTGTTC GGCTGGTTCA ACCGCACGTT CGATCGCAGC
GCGCAGGCCT ATCGGAATGG CGCGCAGGGC GTGATCGCGC GATCCTTGCG GTTCGGATTG
CTGTTCGTGG CGATCTCGGT AGGCGTGGGA CTGATGTTCA TGCGCATTCC GAGCTCGTTC
CTGCCGCAGG AGGATCAGGG CGTCTTGATC ACCAGCGTGC AACTGCCGGT CGGCGCCACG
CAGGACCGCA CGTTGCGCGC GCTCGAACAG GTTCGCGAAT ACTACGCGAC AAAGGAAAAG
GACGCCGTCG ACAGCGTCTT CTATACGGCG GGCTTCGGCT TCTCCGGCCA GGGCCAGAAT
ATCGGCATCG CCTTCGTCAA GTTGAAACCT TTCGATCAGC GAAAGTCGGC GGCCTTGAGT
GCGCAGGCGG TGGCCGGTCG CGCGATGATG GCGTTTCGGC AGATCAAGGA CGGCATGGTG
TTCGCGTTGG CGCCGCCGGC GATCCAGGGC ATGGGCAACT CGAACGGATT CGATTTCTAC
CTGCAGGACG TCAACGGCGC CGGCCATGCG AAACTGATCG AAGCTCGCAA CCAGTTGCTG
GGCGCAGCGT CCCAGAGCAA GCAACTGGCG AATACACGGC CCAATGGGCA GGAGGACGAG
CCGCAATTCT CGGTCACGAT CGACCAGGAG AAGGCGAGTG CGCTCGGTGT CGGCCTCGCG
GATATCAACA CCACGCTGTC GACGGCATGG GGCAGCGACT ACGTCAACGA TTTCATCGAC
CGCGGCCGCG TCAAGAAGGT CTATCTGCAA TCTGACAGGA ATTTCCGGAT GCAGCCGGAT
GACATCGGCC GCTGGTACGT GCGCAACTCG TCCGGCGTGA TGGTGCCGTT CTCGGCCTTC
GCATCCGGTC AGTGGAGCTT CGGATCGCCG CGGCTGGAAC GCTACAATGG ATCGGCGGCG
GTCGAGATTC AGGGCGAGGC TGCCGCAGGC GTCAGCTCCG GAACGGCGAT GGACGAGATC
GACACGCTGG TCAAGCAACT GCCCTCCGGC TTCGGCCACC AATGGACCGG CCTGTCGGCG
CAGGAACGGT TGTCGGGCAG TCAGGCGACG TCGCTCTATG CGATCTCGAC ATTGGTGGTG
TTTCTTTGCC TCGCCGCGCT GTACGAGAGC TGGTCGATCC CGCTCGGCGT GATGTTGGCG
GTGCCGATCG GCATCTTCGG CGCGTTGCTG GCGGCGCTGC TGTTCGGCCA GACCAACGAC
GTCTATTTCA AGGTCGGTCT GTTGACCACG ATCGGCCTGG CGGCGAAGAA CGCGATCCTG
ATCGTCGAGT TCGCGATCGA GCGGCAGGCT GCGGGCCAGC CTTTGGTCGA GGCGACGCTG
GAAGCGGCGC GACAGCGGCT GCGGCCGATT CTGATGACGT CGTTCGCCTT CATCCTCGGC
GTCACGCCGC TCGCGATCGC GTCGGGTGCG GGCTCTGGCG CCCAGAATTC CATCGGCATC
GGTGTGATGG GAGGCATGAT CGCGGCCACC GTGCTCGGCA TCTTCTTCGT GCCTTTGCTG
TATGTCGGCG TGCGCCGGCT GTTCGATCGC AAGTCGGCGA CGGACGAGAC TTCCAAAAGC
GATCCGGCGA AGGGGACGAC GGGATGA
|
|---|
| Protein sequence | MSRFFIERPV FAWVIAITIM LGGLLALQTL PIAQYPQIAP TTVRITGTYA GADAQTVENS
VTKVIEQGMT GIDHLDYMTS TSTSTGQSQI TLTFTAAADP DVAQMQVQNK LQLVTALLPQ
IVQNTGLSVT KSSTGFLMVI AFVSTDGKLT SIDLADYVNS TLNDTLKRIE GVGDTQLFGS
GYAMRIWLDP DKLAKYALMP SNVATAVEAQ NTQVSAGQLG GLPSRKGQQL NATVTARSRL
QTPEQFRNII LKSTTDGSLV RLNDVATVEL GAESYTTTAA FDGMPAAGLG VNLATGANAL
DTAKNVQSTI SRLSATFPQG VSVVYPYDTT PFVRLSIEEV VKTLIEAIAL VFVVMFVFLQ
NIRATLIPTI AVPVVLLGTV GVLSAFGYSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
QEEGLSPKEA TRKSMDEITG ALVGIATVLS AVFIPMAFFG GSVGVIYRQF SVTIVTAMVL
SVITALVLTP ALCATILRPP QAHATGKGLF GWFNRTFDRS AQAYRNGAQG VIARSLRFGL
LFVAISVGVG LMFMRIPSSF LPQEDQGVLI TSVQLPVGAT QDRTLRALEQ VREYYATKEK
DAVDSVFYTA GFGFSGQGQN IGIAFVKLKP FDQRKSAALS AQAVAGRAMM AFRQIKDGMV
FALAPPAIQG MGNSNGFDFY LQDVNGAGHA KLIEARNQLL GAASQSKQLA NTRPNGQEDE
PQFSVTIDQE KASALGVGLA DINTTLSTAW GSDYVNDFID RGRVKKVYLQ SDRNFRMQPD
DIGRWYVRNS SGVMVPFSAF ASGQWSFGSP RLERYNGSAA VEIQGEAAAG VSSGTAMDEI
DTLVKQLPSG FGHQWTGLSA QERLSGSQAT SLYAISTLVV FLCLAALYES WSIPLGVMLA
VPIGIFGALL AALLFGQTND VYFKVGLLTT IGLAAKNAIL IVEFAIERQA AGQPLVEATL
EAARQRLRPI LMTSFAFILG VTPLAIASGA GSGAQNSIGI GVMGGMIAAT VLGIFFVPLL
YVGVRRLFDR KSATDETSKS DPAKGTTG
|
|---|
| |