| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2238 |
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| Symbol | |
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| ID | 3909021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2562396 |
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| End bp | 2563691 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637884133 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_485854 |
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| Protein GI | 86749358 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACTGCGA CATTTGCGGC CCCGAGCCGG CAGGAATGGC CGTTCAAACG CGCACGCTTG
GCGATCCTGG GCGTCCCCTT GGTGGCGGCG CTGCTGCTCG CCGGCTGCGG GCAGGATCAG
GCCGCGGCGC CGAAAAACGC GGGTCTTCCC CGGCCGGAGG TGAGCGTCGT CACGCTGCAT
CCGCGGTCGG TGGCGATCAC CTCGGAATTG TCGGGGCGAA CGACGGCGTC GCTGACGGCG
GAGGTGAGGC CCCAGGTCGG CGGCATCATC AAGTCGCGTT TGTATGAAGA GGGCGGCGAA
GTCTCGGCCG GTGATGCGTT GTATCAGATC GACCCGGCGA GCTATCAGGC GACCTACGAC
AGCGCTGTGG CCGCTCTGGA GAAATCCGAA GCCGCCGTGC CGAGCGCGGC GGCGAAGGTC
GAGCGCTATC AGGGCCTGGT GAAACAGAAC GCGGTGTCCA AGCAGGACTA CGACGACGCC
GTGGCGACGC TGGCGCAGGC TAAGGCCGAC GTCGCCTCCG CCAAGGCGAG CGTCGCGACC
GCCCGGATCA ATCTCGACTA CACCAGGATC GTCGCGCCGA TCGGCGGCCG GATCGACAAA
TCGTCTCTCA CTCCCGGAGC GCTGGTGACG GCGGGCCAGA CCACGCTGCT GACGACGATC
CGGACGCTGG ATCCGATCAA TGTCGACGTC ACGGAATCCA GCACCAACCT GCTGAACTGG
CGCCAAGCGG TCGATGCCGG TCGCATCAAA GCGACCGGCC CGGATGTCAG CATCAAATTG
AAGCTCGACA ATGGAACGAC CTATCCGCTG ACCGGCAAGC TCGCCTTCGT CGAATCGAAC
GTCAGCGAGA CCACAGGCAC CTTCGCGCTG CGCGCGCAGT TTCCCAATCC CAAACGTCTG
CTGCTGCCCG GCATGTATGT CCGCGCCATC ATCGAGCAGG GGATCGCCGA GAACAGCTTC
GTGGTCCCGC AGCGGGCCGT CACGCGCAAC ACCAAAGGAG AAGCCGTCGC GACGATCGTC
ACGGCGGAGG GGAAGGTCGA GCAGCGCGTG CTGACGGTGG GCAACAATGT CGGCAACAAC
TGGCTGGTCA GCGCTGGCGT CAAGGATGGC GATCGCGTGA TCGTCGAGGG CATTCAGATG
GTCCGTCCGG GGCAGGACGT GACCGCCGTC GAGGTGACGA TCGACGAGAA CACCGGTCAG
GTCCGCGACC GCAAGCAGGG ATCGCTGTCG ACCCCGGATC CGGTGCGGTT GGCCGATCGC
GACGCCGATC CGAACGCCGG CGTGGTCGGG AAATAG
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| Protein sequence | MTATFAAPSR QEWPFKRARL AILGVPLVAA LLLAGCGQDQ AAAPKNAGLP RPEVSVVTLH
PRSVAITSEL SGRTTASLTA EVRPQVGGII KSRLYEEGGE VSAGDALYQI DPASYQATYD
SAVAALEKSE AAVPSAAAKV ERYQGLVKQN AVSKQDYDDA VATLAQAKAD VASAKASVAT
ARINLDYTRI VAPIGGRIDK SSLTPGALVT AGQTTLLTTI RTLDPINVDV TESSTNLLNW
RQAVDAGRIK ATGPDVSIKL KLDNGTTYPL TGKLAFVESN VSETTGTFAL RAQFPNPKRL
LLPGMYVRAI IEQGIAENSF VVPQRAVTRN TKGEAVATIV TAEGKVEQRV LTVGNNVGNN
WLVSAGVKDG DRVIVEGIQM VRPGQDVTAV EVTIDENTGQ VRDRKQGSLS TPDPVRLADR
DADPNAGVVG K
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