Gene RPB_2212 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_2212 
Symbol 
ID3907954 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp2514203 
End bp2514811 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content64% 
IMG OID637884107 
Productsigma-24 (FecI-like) 
Protein accessionYP_485828 
Protein GI86749332 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.255212 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGAGG CGGGTTGGGC AGCGCTGCAG CAACGCCTGC TGCTGCGCTA CGACGATTTC 
AAACGGCGCC TGACACGCTA TCTCGGGTCG TCCGAACTGG CTGGCGACGC ATTGCACGAT
ACCTGGCTGC GCTTGCAGCG CGGCGGCCAG ATCGATGCTG TGCGCAGTCC TGACACCTAT
CTGCTACGCA TCGCAATCAA TATGGGCCGC GATCATCTGC GTGCCGAAAA CCGTCTGGTG
TCCACATCCG ATGCTGCGAC CTTGCTCGGC ATCTCCGACG ACGCGCCGGA CGCCGAACGC
GACGCCGAGG GACGCTCGGA ATTGCGGCTG CTCACCGCCA TCATGGCCGA ACTCCCGCCA
CGGCAGAAGG CGATCCTGAT CGCCGCCCGT GTCGAAGGTC TGCCGCGCGG CGAGATCGCG
CGGCGTTACG GCGTTTCCGT GCGCTACGTG CATCGTGAGT TGCAGGCCGC TCACGATTAT
TGCGCCGAGC GTCTCGAAAA AATGACGGCG GACCTGTACC GATTGGCGCC GCGAGAAACG
TCTCTTCCAG AGAGACTTTC ATCACCGCTC CCGGGCGGGC CGCACATCCT GGCTGCGCGC
GATGATTAG
 
Protein sequence
MTEAGWAALQ QRLLLRYDDF KRRLTRYLGS SELAGDALHD TWLRLQRGGQ IDAVRSPDTY 
LLRIAINMGR DHLRAENRLV STSDAATLLG ISDDAPDAER DAEGRSELRL LTAIMAELPP
RQKAILIAAR VEGLPRGEIA RRYGVSVRYV HRELQAAHDY CAERLEKMTA DLYRLAPRET
SLPERLSSPL PGGPHILAAR DD