Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_2162 |
Symbol | |
ID | 3909942 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 2453392 |
End bp | 2454810 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637884056 |
Product | peptidase C14, caspase catalytic subunit p20 |
Protein accession | YP_485779 |
Protein GI | 86749283 |
COG category | [R] General function prediction only |
COG ID | [COG4249] Uncharacterized protein containing caspase domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0611523 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACGGG CAGTGCGGCT GCTGCTGGCG CTTTTCATGA TGGCGTCGTG TTCGGCGGCC TGGGCCGAGA CCCGGGTTGC GCTGGTCGTC GGCAATTCTG CCTATCGTCA CGTCACCGCC CTCGACAATC CGATCAAGGA CGCCGCTCTG ATGGTCGAGA CGTTGAGGCG TCTCGGCTTC AGGCTTGTCG GTGGCGGCGC GCAGCTCGAC GTCGACAAGG CGCGGTTCGA CACGCTGGTG CAGCAGTTCG GCCGCGACGC CGCCGGCGCC GATGTCGGGC TGTTCTACTA TGCGGGCCAT GGCGTGCAGA TTCGTGGCGT CAATTATCTG GTGCCGGTCG GCGCCAACCC GACGCGCGAG GCCGACGTCG ATTTCCAGAT GCTCGATGTC GGGCTGGTGC TGCGGCAGAT GGAGAGTGCC GGCACGCGGC TCAACATCGT CCTGCTCGAC GCCTGCCGCA ACAACCCGTT CGGTGGTCGG GGGCTGCGCG CCGCCGGCGG CGGTTTGGCG CAGATGCAGG CGCCCGAGGG CACGCTGATT TCTTACGCGA CCCAGCCCGG CAACGTCGCC CAGGACGGCG ACGACGGCCA CAGTCCCTAT ACGCGGGCCC TGGCCGAGAT CATGACGCGG CCGGGGCTCG ACATCTTTCA GACCTTCAAC CGCGTCGGGT TGGCCGTGAA AAAGGCGACC GCCAGCGCTC AGCAGCCGTG GCTGTCGTCG TCGCCGATCC AGGGCGACTT CTATTTCTCC GGCCAGGCTG CCGCTGCGGC CGCCGCGCCG ACGTCTCCTC AGACAGCCGC GGTCGCGCCG CCGGAGTCAC CCGGGCTTTC ACCCGCGAGG CCGGCCGAGC CGGTCACGGC GCCGAATCCG TCGCCCTCGA TCTCGTCGTC GCCGCCGCCG CGCCGGGGTT TCCGCGTGCT CGATAGCGTC TCCGAAGGCA TCCTCAACAT GCGCTCCGGG CCCGGCACGG GTCATCCGAT CGTGGTTGCG ATTCCGGCTG GCAGCACGGG CGACTCCAAG GGGAACTGCC GTGCGCCGGA TGATGGCGGC CGCCATCCTT GGTGCGAGGT CGAATGGCGC GGCCGCACCG GCTGGGTCTC GAGCCGATCG ATCGTCGAGA CACGCCGCGA CGAGGCCGCA CCGCCTCAAG CAAAGTCGCG TGCGCGGCCT GTGTTCCGCG TGCTCGGCAG CGTGTCGCAA GGCATCCTCT ATGTGCGCGC CGGCCCGGGC ACGGGTCACC CGGCCTTGTT CTCCATTCCG GCCGGTGCGT CCGGCATCCA GCTCGGGCGC TGCCGCAGCT CCGAAGACGG TGTGGGCGCG CCGTGGTGCG AGGTCGAATG GGGCGGGCGC GCCGGCTGGG CCTCGGCCTG CTGCATGGTC GATGCCGCGA CCGGCGCCTT CGCAACGGTG CGGGATTGA
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Protein sequence | MERAVRLLLA LFMMASCSAA WAETRVALVV GNSAYRHVTA LDNPIKDAAL MVETLRRLGF RLVGGGAQLD VDKARFDTLV QQFGRDAAGA DVGLFYYAGH GVQIRGVNYL VPVGANPTRE ADVDFQMLDV GLVLRQMESA GTRLNIVLLD ACRNNPFGGR GLRAAGGGLA QMQAPEGTLI SYATQPGNVA QDGDDGHSPY TRALAEIMTR PGLDIFQTFN RVGLAVKKAT ASAQQPWLSS SPIQGDFYFS GQAAAAAAAP TSPQTAAVAP PESPGLSPAR PAEPVTAPNP SPSISSSPPP RRGFRVLDSV SEGILNMRSG PGTGHPIVVA IPAGSTGDSK GNCRAPDDGG RHPWCEVEWR GRTGWVSSRS IVETRRDEAA PPQAKSRARP VFRVLGSVSQ GILYVRAGPG TGHPALFSIP AGASGIQLGR CRSSEDGVGA PWCEVEWGGR AGWASACCMV DAATGAFATV RD
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