Gene RPB_2161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_2161 
Symbol 
ID3909941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp2450869 
End bp2453325 
Gene Length2457 bp 
Protein Length818 aa 
Translation table11 
GC content67% 
IMG OID637884055 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_485778 
Protein GI86749282 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.376785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0371729 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGGG AGAAGCTGGC CAGTCAGCTC TCCGCAGACC TCGCTGTGCT TCAGCGGAAA 
TGGCATGCGG CGGTCCAGTC CGGGCAGGCG TTGCCGAGCT ACGAGGAGGT CATGCTCGGC
AGCCTCGGCC GGCTCGCCGA CAACATGGCG CTGCTGGAAC TCTCGGTGGC GAGGCCGGGT
GTGACGCGCA CCGGCCGCTA CGTCCAGCAA TGGCTGGGCG ACGAGCGCTG GGACATTCCG
CTCGACACGC TGTCGCCGGA TTGCGCGATG GCGCTGGTGC AGGTGGCGTC GAGCGCGCTG
CAGAACAAGC GGCCTTATCT CAGCACGGCG CATTTCGTGC GCGACGGCAT CGTGCAGAAA
TACGTGCTGC TGGCGCTGCC GACCGCCTCG CGCTGGGGCA ACACGCTGGT CGGCGTCTAC
GTCAACGAGG ACGGCCTGCG CTACAATCTG CTCGACGCGA TCTTCTCGTC GACCGACGAC
GGCATCGTGT CGCTGACCGC GATCCGCGGC TCCGACGGCC GGCCGTTCGA TTTCCAGATC
GTGCATCTGA ACGAAGGCGC CTCGGCGCTG CTGCAGCAGT CGGTCAATGC GCTGCAATGG
AGCCTGCTGT CGGGCGGGCG GAACTTCCTG TGCGAGCCGG CGGTGATGGC GCGCCTGCTG
GCGCTGGTCG ACAGCGGCGG CCAGGATTCG CTGTCGATCG ACACCGACAA CCGCAATCTC
AGCCTCGGCG TCACCGCGTT CGGCGACATC GTCTCGTTGA CGATTTCCGA CATCACCTCG
CTGAAGAAGC GCGAGGAATC GTTCCGCCTG CTATTCGACG GCAATCCGAT GCCGATGTGG
GTGTTCGACG CGGCCACCAC CGAATTCCTC AACGTCAACG ACGCCGCCGT GCAGCATTAC
GGCTACGATC GCGACGCCTT CCTGCGGATG ACGTTGCGCG AGATCTGGCC GCGCGACGAA
TGGGCCGCGC ACAGTCTGGC CCTGCTGCAG GTCGGCGACA GCTATCAGTC CGGCGGCAAT
TGGCGCCACC TCAAGGCCGA CGGCACCGAG ATCCAGGTGA TGACCTTCGG CCGCCGCGTC
GTCTTCAACG ATCGCGAGGG CTTTCTGGTC GCCGTCGTCG ACGTCACCGA GCGGCGCAAG
GCCGAGGCCA AGATCGCCCA TATGGCGCAT CATGACGGCC TCACCAATCT GCCCAACCGC
GCGCTGTATC AGGAGCGGCT GCAGCAGGCC CTGGAGCAGG CGCGCGGCGG CGGCGGACGC
GTCGCGGTGC TGTGCATCGA TCTCGACCTG TTCAAGAACG TCAACGATTC GTTCGGCCAT
CCGATGGGCG ACCGGCTGCT GCGCTGCGTC GCCGACCGGC TGCGCGCGCA GATCGGCGGC
AACGATCTGG TGGCGCGGCT CGGCGGCGAC GAATTCGCCG TGGTGCTGGC GTCGGTGGCC
TCGCCGAACG AGGCCAGCGA TGTCGCCGCG CGCCTGATCG AGCTCGTCAG CGCGCCCTAC
GACATGGACG GGCTCGAAGT GGTGATCGGC GCCTCGATCG GCATCGCGCT GGCGCCGGGC
GACGGCGACG ATTGCGACGT GCTGATGCGC AGCGCCGACA TGGCGCTGTA TCGCGCCAAG
GCGGCGGGCG GCGGTTGCCA TCATTTCTTC GAAAAGGAGA TGGACCGCCA GGCGCAGCGC
CGCCGCGACA TGGAGCGGGA CCTGCGCCAC GCCTTCGCGC GCGGCGAGTT CGATCTGCAC
TATCAGCCGC TGATCGATCT CGCCGAGGAC CGCGTCAGCG GCTTCGAAGC GCTGCTGCGC
TGGCACCATC CCGAGCGCGG CATGGTCTCG CCGGCCGATT TCATTCCGAT CGCCGAGGAC
ATCGGCCTGA TCGTCGGCCT CGGCGAATGG GTGCTGCGGC AGGCCTGCCT CGAGGCGGCG
CGCTGGCCGA ACGACGTCAA GATCGCGGTC AATCTGTCGC CGGTGCAGTT CCGCAGCCGC
AATCTGGTGC AGGTGGTGAT CTCGGCGCTG GCGCAGTCCG GGCTGTCGCC GCGCCGGCTC
GAGCTCGAGA TCACCGAGTC GCTGTTCCTC GCCGACAGCG AGGCCAATCT GGCGACGCTG
CATCAGCTCC GCAGCCTCGG CGTGCGGATC TCGATGGACG ATTTCGGCAC CGGCTATTCG
TCGCTCAGTT ACTTGCGCAG CTTCCCGTTC GACAAGATCA AGATCGACCG CTCCTTCGTC
AAGGATCTCA CCGAGCGCCC GGATTGCCTC GCCATCGTGC GCGCCATCGC CGGCCTCGGC
CGCAGCCTGA ACATCACCAC GCTGGCCGAA GGCGTCGAAA CCGTCGAGCA GCTCGACGCG
CTGCGCGCCG AGGGCTGCCA CGAAGTGCAG GGCTTCCTGT TCAGCCCGGC AAGGCCGGCC
GCGGAGATCG CCGGCCTGCT GATGAAGTTC GGCCACGCCG CATCAAAGGC GGCGTGA
 
Protein sequence
MKREKLASQL SADLAVLQRK WHAAVQSGQA LPSYEEVMLG SLGRLADNMA LLELSVARPG 
VTRTGRYVQQ WLGDERWDIP LDTLSPDCAM ALVQVASSAL QNKRPYLSTA HFVRDGIVQK
YVLLALPTAS RWGNTLVGVY VNEDGLRYNL LDAIFSSTDD GIVSLTAIRG SDGRPFDFQI
VHLNEGASAL LQQSVNALQW SLLSGGRNFL CEPAVMARLL ALVDSGGQDS LSIDTDNRNL
SLGVTAFGDI VSLTISDITS LKKREESFRL LFDGNPMPMW VFDAATTEFL NVNDAAVQHY
GYDRDAFLRM TLREIWPRDE WAAHSLALLQ VGDSYQSGGN WRHLKADGTE IQVMTFGRRV
VFNDREGFLV AVVDVTERRK AEAKIAHMAH HDGLTNLPNR ALYQERLQQA LEQARGGGGR
VAVLCIDLDL FKNVNDSFGH PMGDRLLRCV ADRLRAQIGG NDLVARLGGD EFAVVLASVA
SPNEASDVAA RLIELVSAPY DMDGLEVVIG ASIGIALAPG DGDDCDVLMR SADMALYRAK
AAGGGCHHFF EKEMDRQAQR RRDMERDLRH AFARGEFDLH YQPLIDLAED RVSGFEALLR
WHHPERGMVS PADFIPIAED IGLIVGLGEW VLRQACLEAA RWPNDVKIAV NLSPVQFRSR
NLVQVVISAL AQSGLSPRRL ELEITESLFL ADSEANLATL HQLRSLGVRI SMDDFGTGYS
SLSYLRSFPF DKIKIDRSFV KDLTERPDCL AIVRAIAGLG RSLNITTLAE GVETVEQLDA
LRAEGCHEVQ GFLFSPARPA AEIAGLLMKF GHAASKAA