| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2161 |
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| Symbol | |
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| ID | 3909941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2450869 |
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| End bp | 2453325 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637884055 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_485778 |
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| Protein GI | 86749282 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.376785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0371729 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGGG AGAAGCTGGC CAGTCAGCTC TCCGCAGACC TCGCTGTGCT TCAGCGGAAA
TGGCATGCGG CGGTCCAGTC CGGGCAGGCG TTGCCGAGCT ACGAGGAGGT CATGCTCGGC
AGCCTCGGCC GGCTCGCCGA CAACATGGCG CTGCTGGAAC TCTCGGTGGC GAGGCCGGGT
GTGACGCGCA CCGGCCGCTA CGTCCAGCAA TGGCTGGGCG ACGAGCGCTG GGACATTCCG
CTCGACACGC TGTCGCCGGA TTGCGCGATG GCGCTGGTGC AGGTGGCGTC GAGCGCGCTG
CAGAACAAGC GGCCTTATCT CAGCACGGCG CATTTCGTGC GCGACGGCAT CGTGCAGAAA
TACGTGCTGC TGGCGCTGCC GACCGCCTCG CGCTGGGGCA ACACGCTGGT CGGCGTCTAC
GTCAACGAGG ACGGCCTGCG CTACAATCTG CTCGACGCGA TCTTCTCGTC GACCGACGAC
GGCATCGTGT CGCTGACCGC GATCCGCGGC TCCGACGGCC GGCCGTTCGA TTTCCAGATC
GTGCATCTGA ACGAAGGCGC CTCGGCGCTG CTGCAGCAGT CGGTCAATGC GCTGCAATGG
AGCCTGCTGT CGGGCGGGCG GAACTTCCTG TGCGAGCCGG CGGTGATGGC GCGCCTGCTG
GCGCTGGTCG ACAGCGGCGG CCAGGATTCG CTGTCGATCG ACACCGACAA CCGCAATCTC
AGCCTCGGCG TCACCGCGTT CGGCGACATC GTCTCGTTGA CGATTTCCGA CATCACCTCG
CTGAAGAAGC GCGAGGAATC GTTCCGCCTG CTATTCGACG GCAATCCGAT GCCGATGTGG
GTGTTCGACG CGGCCACCAC CGAATTCCTC AACGTCAACG ACGCCGCCGT GCAGCATTAC
GGCTACGATC GCGACGCCTT CCTGCGGATG ACGTTGCGCG AGATCTGGCC GCGCGACGAA
TGGGCCGCGC ACAGTCTGGC CCTGCTGCAG GTCGGCGACA GCTATCAGTC CGGCGGCAAT
TGGCGCCACC TCAAGGCCGA CGGCACCGAG ATCCAGGTGA TGACCTTCGG CCGCCGCGTC
GTCTTCAACG ATCGCGAGGG CTTTCTGGTC GCCGTCGTCG ACGTCACCGA GCGGCGCAAG
GCCGAGGCCA AGATCGCCCA TATGGCGCAT CATGACGGCC TCACCAATCT GCCCAACCGC
GCGCTGTATC AGGAGCGGCT GCAGCAGGCC CTGGAGCAGG CGCGCGGCGG CGGCGGACGC
GTCGCGGTGC TGTGCATCGA TCTCGACCTG TTCAAGAACG TCAACGATTC GTTCGGCCAT
CCGATGGGCG ACCGGCTGCT GCGCTGCGTC GCCGACCGGC TGCGCGCGCA GATCGGCGGC
AACGATCTGG TGGCGCGGCT CGGCGGCGAC GAATTCGCCG TGGTGCTGGC GTCGGTGGCC
TCGCCGAACG AGGCCAGCGA TGTCGCCGCG CGCCTGATCG AGCTCGTCAG CGCGCCCTAC
GACATGGACG GGCTCGAAGT GGTGATCGGC GCCTCGATCG GCATCGCGCT GGCGCCGGGC
GACGGCGACG ATTGCGACGT GCTGATGCGC AGCGCCGACA TGGCGCTGTA TCGCGCCAAG
GCGGCGGGCG GCGGTTGCCA TCATTTCTTC GAAAAGGAGA TGGACCGCCA GGCGCAGCGC
CGCCGCGACA TGGAGCGGGA CCTGCGCCAC GCCTTCGCGC GCGGCGAGTT CGATCTGCAC
TATCAGCCGC TGATCGATCT CGCCGAGGAC CGCGTCAGCG GCTTCGAAGC GCTGCTGCGC
TGGCACCATC CCGAGCGCGG CATGGTCTCG CCGGCCGATT TCATTCCGAT CGCCGAGGAC
ATCGGCCTGA TCGTCGGCCT CGGCGAATGG GTGCTGCGGC AGGCCTGCCT CGAGGCGGCG
CGCTGGCCGA ACGACGTCAA GATCGCGGTC AATCTGTCGC CGGTGCAGTT CCGCAGCCGC
AATCTGGTGC AGGTGGTGAT CTCGGCGCTG GCGCAGTCCG GGCTGTCGCC GCGCCGGCTC
GAGCTCGAGA TCACCGAGTC GCTGTTCCTC GCCGACAGCG AGGCCAATCT GGCGACGCTG
CATCAGCTCC GCAGCCTCGG CGTGCGGATC TCGATGGACG ATTTCGGCAC CGGCTATTCG
TCGCTCAGTT ACTTGCGCAG CTTCCCGTTC GACAAGATCA AGATCGACCG CTCCTTCGTC
AAGGATCTCA CCGAGCGCCC GGATTGCCTC GCCATCGTGC GCGCCATCGC CGGCCTCGGC
CGCAGCCTGA ACATCACCAC GCTGGCCGAA GGCGTCGAAA CCGTCGAGCA GCTCGACGCG
CTGCGCGCCG AGGGCTGCCA CGAAGTGCAG GGCTTCCTGT TCAGCCCGGC AAGGCCGGCC
GCGGAGATCG CCGGCCTGCT GATGAAGTTC GGCCACGCCG CATCAAAGGC GGCGTGA
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| Protein sequence | MKREKLASQL SADLAVLQRK WHAAVQSGQA LPSYEEVMLG SLGRLADNMA LLELSVARPG
VTRTGRYVQQ WLGDERWDIP LDTLSPDCAM ALVQVASSAL QNKRPYLSTA HFVRDGIVQK
YVLLALPTAS RWGNTLVGVY VNEDGLRYNL LDAIFSSTDD GIVSLTAIRG SDGRPFDFQI
VHLNEGASAL LQQSVNALQW SLLSGGRNFL CEPAVMARLL ALVDSGGQDS LSIDTDNRNL
SLGVTAFGDI VSLTISDITS LKKREESFRL LFDGNPMPMW VFDAATTEFL NVNDAAVQHY
GYDRDAFLRM TLREIWPRDE WAAHSLALLQ VGDSYQSGGN WRHLKADGTE IQVMTFGRRV
VFNDREGFLV AVVDVTERRK AEAKIAHMAH HDGLTNLPNR ALYQERLQQA LEQARGGGGR
VAVLCIDLDL FKNVNDSFGH PMGDRLLRCV ADRLRAQIGG NDLVARLGGD EFAVVLASVA
SPNEASDVAA RLIELVSAPY DMDGLEVVIG ASIGIALAPG DGDDCDVLMR SADMALYRAK
AAGGGCHHFF EKEMDRQAQR RRDMERDLRH AFARGEFDLH YQPLIDLAED RVSGFEALLR
WHHPERGMVS PADFIPIAED IGLIVGLGEW VLRQACLEAA RWPNDVKIAV NLSPVQFRSR
NLVQVVISAL AQSGLSPRRL ELEITESLFL ADSEANLATL HQLRSLGVRI SMDDFGTGYS
SLSYLRSFPF DKIKIDRSFV KDLTERPDCL AIVRAIAGLG RSLNITTLAE GVETVEQLDA
LRAEGCHEVQ GFLFSPARPA AEIAGLLMKF GHAASKAA
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