| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2109 |
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| Symbol | |
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| ID | 3908523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 2398540 |
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| End bp | 2400609 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637884002 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_485726 |
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| Protein GI | 86749230 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.527307 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.040839 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGAG ACCAGCACGC CTCGCGGCCG ACCAAGCGGA TCGTGTTCGA CGATCCGCAT
TCGGTCGACA ACATGCAGGA AGCCGAAGTC ACGCGGGTCC GCTCCCTGCG CGGCGCCTGG
CGCTGGGCGC TGATCGCCGC CGCGGCGGCG ACGATCCTGC TGTGCATCAA CCAGCAATTC
TCGCTGCGGT TCTTCGTCGG CTACACCCAG CTCAACACCG AGTATTTCTA TCTCCTGATC
GCCTTGATGC TGCCGTTCAC CTTCCTGATC TTCCCCGGCT CGGCGCGGGC CCGGCTCGAC
CGCGTGCCGT GGTACGATAT CGTGCTGTTC GCGCTGACCG CCGTCTCCGC GCTGGTGCTG
ATGGCCTATG TCCGCAAGGC CGCCGAGGCC GGCTGGGAGT TCGGCGGCGC GCCGACGCAG
GTGTTCGTCG CTGGGCTGGT GATGTGGGCG CTGCTGATGG AGGCGCTGCG CCGCACCGGC
GGCTGGAGCC TCGTGCTCTG CGTGTTCCCG TTCACGGTGT ATCCGCTGTT CGCCGGCGCC
GGATGGCTCG GCCCGCTCGG CGGCTCGCAA TCGACGCTGG AACAGGCGAC CGCCTATCAC
GTGCTGTCCG GCGAAAGCCT GCTCGGCATC CCGATCCAGG CCTTCGCCGA CACCGTGATC
GGCTTTCTGG TGTTCGGCAC CGCGCTGATG ATGACCGGCG CCGGCAAATT CTTCATCAAC
CTGTCGTTCG CGATCTGCGG CACGTTCCGC GGCGGCGCCG CCAAGGTCTG CATCTTCGCC
TCCGCCCTGC TCGGCATGAT GTCCGGCTCG ATCATCTCCA ACGTGCTGAC CGCCGGCACC
ATGACCATTC CGGTGATGAA GAAGAGCGGC TTCCGCGCCT CCTATGCGGC GGCGATCGAG
GCCTGCGCCT CGACCGGCGC GGTGCTGGCG CCGCCGGTGA TGGGCGCCAC CGCCTTCGTC
ATCGCGCAGT TCCTCAACGT CTCCTACGCC GAGGTCGCGC TCGCCGCGAT CATCCCGGCC
GCTCTGTTCT ATATCGGCCT GTTCATGCAG GTGGACTCCT ACGCCGCGCG GCACGGGCTG
GAAGGCATTC CGCGCAGCGA GCTGCCTGCC TTGGGGCAGA CGCTGAAGGA AGGCTGGTAC
TACGTCTTCG TGATCGCGTT GCTGGTGGTG ATGCTGCTGC ACTTCAAGCG CGAGAGCCAC
GCGCCGTTCT ATGCCACCGC GCTACTGCTG GTGCTCAACC AGATCTTTTC CCGCGAGACG
CGCTGGACGC CGGCGACGAT CGCCCGGTTC TTCGAGGTCA ACGGCCGAAC CTTCGTCGAG
CTGATCGGCA TTCTCGCCGG CTGCGGCCTG CTGATCGGCG CGTTCTCGAT GACCGGCGTG
ATCTCCAGCC TCGCCGGCGA CCTGCTGCGG ATCGCCGGCG ACGACGTGTT CCTGCTGCTG
GTGATGTGCG CGGTGACCAG CCTCATCCTC GGCCTCGGCC TGACGACGAC CGCCTGCTAC
ATCTTCCTCG CCATCCTGGT GGCGCCGGCG CTGGAGAAGC TCGGGCTGAA CCGGATGGCG
GTGCACATGT TCATCTTCTA CTGGGGCATG CTGTCGTCGA TCACGCCGCC GGTGGCGATC
GCCTCCTTCG CCGCCGCCGG CATCGCCGGC TCGCCGGCGA TGAAGACCGG CTGGGAATCG
ATGTGGGTCG GCAGCATCAT CTATTTCATC CCGTTCTTCT TCGTGATGAA CCCGGCGCTG
GTGCTGCAGG GACCGGACCC CTATGCCGCC GCGCTCGGCC TGATGGCGCT GGCGGCGCTC
GGCACGCTGT TCATCTGCGG CGGCATCCAG GGCTATCAGG TCGGTATCGG CGATCTGCGC
CGCGCCGGCG CGCTGCAATG GCCGCTGCGC GTGGCGCTGG TGATCGGCGG CTTCGTGCTG
GCGACGCCGG GCGGCGGCAT CAACCCGCTG TCGCAGACGC AGATCACCGG GCTCGGGCTG
TGCATCCTCG CGCCGACCGT ACTGATCGCG CTGCTGCTGG TGCGGCGCGG CGGACGATCG
CGAAATATCG CAAGTCCGTC GCTGCGGTGA
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| Protein sequence | MRRDQHASRP TKRIVFDDPH SVDNMQEAEV TRVRSLRGAW RWALIAAAAA TILLCINQQF
SLRFFVGYTQ LNTEYFYLLI ALMLPFTFLI FPGSARARLD RVPWYDIVLF ALTAVSALVL
MAYVRKAAEA GWEFGGAPTQ VFVAGLVMWA LLMEALRRTG GWSLVLCVFP FTVYPLFAGA
GWLGPLGGSQ STLEQATAYH VLSGESLLGI PIQAFADTVI GFLVFGTALM MTGAGKFFIN
LSFAICGTFR GGAAKVCIFA SALLGMMSGS IISNVLTAGT MTIPVMKKSG FRASYAAAIE
ACASTGAVLA PPVMGATAFV IAQFLNVSYA EVALAAIIPA ALFYIGLFMQ VDSYAARHGL
EGIPRSELPA LGQTLKEGWY YVFVIALLVV MLLHFKRESH APFYATALLL VLNQIFSRET
RWTPATIARF FEVNGRTFVE LIGILAGCGL LIGAFSMTGV ISSLAGDLLR IAGDDVFLLL
VMCAVTSLIL GLGLTTTACY IFLAILVAPA LEKLGLNRMA VHMFIFYWGM LSSITPPVAI
ASFAAAGIAG SPAMKTGWES MWVGSIIYFI PFFFVMNPAL VLQGPDPYAA ALGLMALAAL
GTLFICGGIQ GYQVGIGDLR RAGALQWPLR VALVIGGFVL ATPGGGINPL SQTQITGLGL
CILAPTVLIA LLLVRRGGRS RNIASPSLR
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