| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2107 |
|---|
| Symbol | |
|---|
| ID | 3908521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2395757 |
|---|
| End bp | 2397865 |
|---|
| Gene Length | 2109 bp |
|---|
| Protein Length | 702 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637884000 |
|---|
| Product | CoA-binding |
|---|
| Protein accession | YP_485724 |
|---|
| Protein GI | 86749228 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1042] Acyl-CoA synthetase (NDP forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0186682 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTC TCCGCGCCGC CCTCGATCCG AAATCCGTGG CCATCATCGG CGCCTCGGAC
AATCCCAACA AGGTCGGCGG ACGGCCGGTG CATTTTCTCG GCAAGTTCGG CTTTGCGGGC
AAGATCTATC CGATCAATCC CAGCCGGCCC GAAATCCAGG GCCACAAGAG CTACGCGTCG
CTGCAGGATC TGCCGGAAGC GCCCGAGATG GTGATCGTCG CGGTCGCCGG TGACAACGCC
ATCGCCGCGG TCGAAGATTG CGCGGCGTTC GGTGTCAAGA TCGCGGTGGT GATGGCGTCG
GGCTTCGGTG AGGTCGATGC GGGCGAAGGC AAGGCGAAAG AGCGCCGCAT GGTCGCTGCC
GCGCACAAGG CCGGGATGCG CATCGTCGGT CCGAACTCGC AGGGCCTCGC CAATTTCGGC
ACCGGCGCGA TCGCGTCGTT CTCGACGATG TTCATGGACA TGGACCGCGC CGCGGAGGAC
GCCAAGGGCC ACGTCGCGAT GCTGAGCCAG TCCGGCGCGC TGTCGACGGT GCCGGTCGGC
TTCCTGCGCC AGAAGGGCAT CGGCGTCCGC CACACCCACG CCACCGGCAA CGATTCCGAC
ATCACCGTCG GCGAACTGGC CTGCGCGGTC GCCGAGGACT CCGAAGTCAA GCTGATGCTG
CTGTACCTCG AAAGCATCCC GGACAAGCGC TATCTCGAAG AGCTGGCGTC GATCGCACTC
GATCGCGACC TGCCGATCAT CGCGCTGAAG TCGGGCCGCA CCGACGCCGG CAAGGCGGCG
GCGCAATCGC ACACCGGCGC GCTCGCCAAC GAGGACCGCG TGGTCGACGC GTTCTTCGAA
CATCACGGCA TCTGGCGCGC GCCGGACATG CGCGGCCTCG TCGAGGCGAC CGAGCTGTAT
CTCAAGGACT GGAAGCCGCA GGGGCGGCGG CTGGTGGCGA TCAGCAATTC CGGCGCCGTC
TGCGTGCTCA CCGCGGATGC CGCAACCTCC GTCGGCATGC CGATGGCGAA GCTGGCGCCG
CAGACCGACG CGAAGCTGAA AGGCATCCTG CCGAGCTTCG CCACCACCAC CAATCCGATC
GATCTCACCG CGGCGCTGCT GTCGAACAGC GCGCTGTTCG GCGACATTCT GCCGGTGATC
GCCGAGGACC CCGCCGCCGA TGCGTTCCTG ATCGGCGTGC CGGTGGCGGG GCCGGGCTAC
GACGTCGAAG CGTTCTCGCG CGATGCGGCG GCGTTCGGCA AACAGACCGG CAAGCCGCTG
GTGGTGGCGG CGACGCAGCC GAGCGTGGCG CAGGCCTTCG CGGCGAACGG CACCTCGGTG
TTTCCGACCG AAGTCGAGGC GGTCACCGCG CTGCATCAGT TCCTCGCGCA TCGCGAACTG
ATGGCCAAGA CACGCGCGCG CCGCACGGCG CTGGCGCCGG GCGAGGCGCT GATCGCATCG
CCCGCCGCGG AGACCACGAT GCTGAACGAG GCGGACAGTC TCGGTCTGCT GGCCGCGCGC
GGCATTCCGG TGGTGCCGCA TCGGTTGTGC CTGTCGCGCA ACGAGGCGAT CGCGGCGTTC
AACATCATCG GCGGTCCGGT GGTGGTGAAG GGCTGTTCGG CCGATATCGC CCACAAATCC
GAACTCGGCC TGGTGCGGCT CGGCGTCAAT TCGGCCGATA CCACCGGCGA CATCTTCACC
GAGATGGAGC AGATCATCGC GAAAAACGGC TCGCGCTTCG ACGGCGTCAT CGTCGCTTCG
ATGGCCGGCG GCCGCCGCGA GATGATGATC GGCGCGCATC GCGATCCGGT GTTCGGGCCG
GTGGTGGTGG TCGGCGACGG TGGCAAATAT GTCGAGATCG TCAAGGACAC GAGATTGCTG
CTGCCGCCGT TCACGGCGCA GGATGTGCGC GACGCATTGC AGTCGCTGCG GATCGCGCCG
CTGTTCGCAG GCGTCCGCGG CGAGCCGCCG ATGGATCTCG ACGCGCTGGT CGACGCAGTG
GTGAAGGTCG GCGCATTGAT GCGCGATCCC GCCGCGCGCG TCGCCAGCCT CGACCTCAAT
CCGGTGATGC TCGGCAGCGA AGGTCAGGGC TGCGTCGTGG TCGACGCCGT GGTGTTCCAC
GGCGTCTGA
|
|---|
| Protein sequence | MSRLRAALDP KSVAIIGASD NPNKVGGRPV HFLGKFGFAG KIYPINPSRP EIQGHKSYAS
LQDLPEAPEM VIVAVAGDNA IAAVEDCAAF GVKIAVVMAS GFGEVDAGEG KAKERRMVAA
AHKAGMRIVG PNSQGLANFG TGAIASFSTM FMDMDRAAED AKGHVAMLSQ SGALSTVPVG
FLRQKGIGVR HTHATGNDSD ITVGELACAV AEDSEVKLML LYLESIPDKR YLEELASIAL
DRDLPIIALK SGRTDAGKAA AQSHTGALAN EDRVVDAFFE HHGIWRAPDM RGLVEATELY
LKDWKPQGRR LVAISNSGAV CVLTADAATS VGMPMAKLAP QTDAKLKGIL PSFATTTNPI
DLTAALLSNS ALFGDILPVI AEDPAADAFL IGVPVAGPGY DVEAFSRDAA AFGKQTGKPL
VVAATQPSVA QAFAANGTSV FPTEVEAVTA LHQFLAHREL MAKTRARRTA LAPGEALIAS
PAAETTMLNE ADSLGLLAAR GIPVVPHRLC LSRNEAIAAF NIIGGPVVVK GCSADIAHKS
ELGLVRLGVN SADTTGDIFT EMEQIIAKNG SRFDGVIVAS MAGGRREMMI GAHRDPVFGP
VVVVGDGGKY VEIVKDTRLL LPPFTAQDVR DALQSLRIAP LFAGVRGEPP MDLDALVDAV
VKVGALMRDP AARVASLDLN PVMLGSEGQG CVVVDAVVFH GV
|
|---|
| |