| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2104 |
|---|
| Symbol | |
|---|
| ID | 3908518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2392867 |
|---|
| End bp | 2394081 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637883997 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_485721 |
|---|
| Protein GI | 86749225 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0421788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0185484 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCCAC TCGCAGGCGT GACGATCGTC GACATGACGT CGGTGCTGAT GGGGCCTTAC
GCGACCCAGA TGCTGGGCGA TTACGGCGCG GATGTCGTCA AGATCGAGTC CCCCGACGGC
GACGTCACGC GGCAGATCGG CCCGGCGCGG AATCCCGGCA TGGGACCGGT GTTCCTCAAT
GCCAACCGCA ACAAGCGCAG CATCTGCCTC GATCTCAAAC ACGCCGCCGG CCGCGACGCC
GCGCTGCGGC TGATTGCGGG CGCCGACGTG CTGGTGTACA ACGTGCGTCC GCAGGCGATG
GCGCGGCTGC GGCTCGGCTA TGACGAGGTC GCGGCGATCA ATCCGCGGCT GATCTATGCC
GGGCTGTTCG GCTTCGGCCA GGACGGACCC TATGCGGCCA AACCCGCTTA TGACGATCTA
ATCCAGGGCG CGACAGCGCT GCCGGCGCTG AACGCGCGTA TCGGTGACGG CACGCCGCGC
TACGTGCCTA ACGCGCTGGT CGACCGCATC GTCGGGCTCA CCGCGGTCGG CGCGATCTGC
GCCGCGCTGG TGCATCGCGA CCGCACTGGA CAGGGGCAGC GCGTCGGCGT CCCGATGTTC
GAGACGATGG CGGGCTTCGT GATGGGTGAT CATCTCGGCG GGCTCACCTA CGAGCCGCCG
CTCGATCGCG GCGGCTATGC CCGGCACCTG TCGCCGGACC GCCGGCCGTA CCAGACCGCC
GACGGCTACA TCTGCGCGAT GGTGTACAAC GACAAGCAGT GGGGCAGCTT CCTGCGCGCG
ATCGGCCGCG ACGATCTGCT GAGCGACGAG CGTTACACGT CGTTCGCCAA GCGCGCCGTG
AACATCGACG TGGTCTATGC CGAGCTGGCG CGGATCTTCC TGACGCGCAG CACGGCGGAG
TGGACGGAAC TGCTCGATGC CGCCGACGTG CCGGCGATGC GGATGCACGA TCTCGAAAGC
CTGCTCGACG ATCCGCATCT GGTCGCGACC GATTTCTTCC CCGTCGTCGA TCATCCGAGC
GAAGGCCCGA TCCGCGACAT GAGAGTCTCG GCGACCTTTG CGGCGACGCC CGTCGCGCGC
CAGCGCCTCG CGCCGCGCTT GGGCGAGCAG GGGGCGGAGG TGCTGCGCGA GGCCGGCTAC
AGCGACGACG AGATCGAGGC GCTGGCTGGA TGCGGCGCGT TGAAGCTGCC GGCGGCGGGC
AAGGTGGCGA GTTGA
|
|---|
| Protein sequence | MGPLAGVTIV DMTSVLMGPY ATQMLGDYGA DVVKIESPDG DVTRQIGPAR NPGMGPVFLN
ANRNKRSICL DLKHAAGRDA ALRLIAGADV LVYNVRPQAM ARLRLGYDEV AAINPRLIYA
GLFGFGQDGP YAAKPAYDDL IQGATALPAL NARIGDGTPR YVPNALVDRI VGLTAVGAIC
AALVHRDRTG QGQRVGVPMF ETMAGFVMGD HLGGLTYEPP LDRGGYARHL SPDRRPYQTA
DGYICAMVYN DKQWGSFLRA IGRDDLLSDE RYTSFAKRAV NIDVVYAELA RIFLTRSTAE
WTELLDAADV PAMRMHDLES LLDDPHLVAT DFFPVVDHPS EGPIRDMRVS ATFAATPVAR
QRLAPRLGEQ GAEVLREAGY SDDEIEALAG CGALKLPAAG KVAS
|
|---|
| |