| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2093 |
|---|
| Symbol | |
|---|
| ID | 3908507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2378657 |
|---|
| End bp | 2379406 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637883986 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_485710 |
|---|
| Protein GI | 86749214 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0144582 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCA TCGATCTCAA CCATCGCTGC GCCGTGGTCA CCGGCGGCGC GCAGGGGTTC
GGGCGGGCGA TCGCCGAGCG GTTTGCGGCG TCGGGTGCGC GGGTGGCGAT CTGGGATCAC
GACATCGCGC TGGCCGAGAC CACCGCCAAG GAAATCGGCG ACGATGTCGT CACCGCCTAT
CAGGTCGACG TCACCGATCC AGCCGCGGTC GACAAGGCGC GCGACGCGAC GATGGCAGCG
TTCGGCAAGA TCGACATTCT GGTCAACAAT GCCGGCATCG CCGGCATCAA CAAGACGGTG
TGGGACACCG ACTACGAGGA ATGGCGTAAG GTGCTGCGGA TCAATCTCGA CGGTCCGTTC
ATCGTCTGCA AGTCGATCGT GCCGTTGATG ATCGCGCACA AATACGGCCG CATCGTCAAT
ATTGCCTCCA TCGCCGGCAA GGAAGGCAAC CCCAACGCGG CGCACTACTC GGCCTCGAAA
GCCGGGCTGA TCGCGCTGAC CAAATCGCTC GGCAAGGAGC TGGCGTCCTA TGACATCGCC
GTCAACGCGG TGACGCCGGC GGCGGCGCGG ACCGCGATCT TCGATCAGAT GACGCAACAG
CATATCGACT TCATGCTGTC GAAAATCCCC AAGGGCCGCT TCGTGCTGGT GGAAGAACTG
GCCGCGATGG TGGCGTGGCT AGCGTCGGAA GACTGCGCGT TCTCGACCGG CGCGGTGTTC
GACATTTCGG GCGGCCGGGC GACGTACTGA
|
|---|
| Protein sequence | MNTIDLNHRC AVVTGGAQGF GRAIAERFAA SGARVAIWDH DIALAETTAK EIGDDVVTAY
QVDVTDPAAV DKARDATMAA FGKIDILVNN AGIAGINKTV WDTDYEEWRK VLRINLDGPF
IVCKSIVPLM IAHKYGRIVN IASIAGKEGN PNAAHYSASK AGLIALTKSL GKELASYDIA
VNAVTPAAAR TAIFDQMTQQ HIDFMLSKIP KGRFVLVEEL AAMVAWLASE DCAFSTGAVF
DISGGRATY
|
|---|
| |