| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2088 |
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| Symbol | |
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| ID | 3908502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2373243 |
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| End bp | 2375624 |
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| Gene Length | 2382 bp |
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| Protein Length | 793 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637883981 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_485705 |
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| Protein GI | 86749209 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0823412 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGGGG CAAAGGCGCC GAGATCGTTG CGCGCGGAAG CATCGATCCG GACTTTCAAC
GACGAACTCG ACAATCACTA CGGCCGCAAA GTGTCGGCCG TCGCCGGCAT GATCGCGGTG
GCGTCGATCG GCGGCGCCGA GGCGCAACAA TCCAGCCTTC CGGCGGTCAC CGTCGACGCC
CCGGTGGCGC GACCGCGTCC GGCGGCGAAG CCGACGCCCG ACCAGGTCCG TGCCCGCACC
GCGCTGCGTC GCGCGGCGCG GCGGGCTCAG CCGGCTCAGG TGGCGCCGGT ACCGTTCCCG
AATGCCGGCG CGCTGTCGGC GGATCGCAAC CCCTATGCCG ACGCGGATGC GCCCTACAAG
GTCGACCGGC TGTCGGGCAC CAAGTTCACC GAGCCGCTGC TGAACACGCC GCGCACCGTG
ACCGTGCTGA GCAAAGAGAT CCTGGAAGAC AAGAACGCCA CCTCGCTGCG CGACATCGCG
CGCTCCACCG CCGGCGTCAC GCTCGGTACC GGGGAGGGCG GCAACGCCTT CGGCGACCGC
TTCTTCATCC GCGGCTTCGA TGCCCGCAAC GACGTGTTCA TCGACGGCAT CCGCGATCCC
GCGATCTCGA TCCGCGAGAA TTTCTTCACC GAGCAGGTCG AGATCCTGCG CGGCCCGGCC
TCGACCATGG CCGGCCGCGG CACCGCCGGC GGCGCCATCA ACATCGTCAC CAAGCAGGCC
ACCACCGCCG GCAATTTCAC CAAGGCCGAG ACCACCTTCG GCACCGACGC CACCAAGCGC
GTCACCGTCG ACGTCAACCA GGTGATCAGC CCGACGCTCG CGGTGCGGTT CGACGGCCTG
TATCAGAAGG CCAATGTCGC CGGGCGCAAC TACGTCTATG ACGACCGCTG GGGCACGCTC
GCCGCGGTGA AGTGGACGCC GACCGACGCC GTCAAGGTCA CCGCCAACTA CGTCCACACC
GATCTCGACG GCCTGCCGGA TTTCGGCGTG CCCTACAACA CCACGCTGCG GAAGCCTTCG
ACCAGCGTCA ACGTTCCGCG CGACACCTAT TACGGCTTCA TCAATCGCGA CTTCCAGAAG
GCGCAGCAGG ATTTCGGCAC CGTGATCGGC GAGTTCGCCA TCACCCCCGA TCTGACGCTG
AGCAATCGTT CGCGCGCCGG CCGTTCGGTG CTCGACTACA TCGGCACACT GCCGAGCAAT
CCGACCGCGA CCACCGTGCA GCTCGCCTCG CAGAGTCGCT ATCAGGTCAC CAACGTGCTC
GCCAACCAGA CCGACCTGAC CTACAAATTC GACACCGGTC CGGTGAAACA CGCGCTGATC
GGCGGCGCCG AAATCTCGCG CGAGAGCGTG ATGCGCGACA CCTATGCGGG GCTGACCTCG
GAACTGACCG GGTTCCAGAC CGGCGGCCGC ATCACCGTGC CGCTGCTGTC GCCGCCGAAC
GAGTTCGAGT TCGCCAGCAC GCCGCAGCGC GCCTACAACC CGACCTTCAT CACCGTCGAC
ACCAAGTCCG CTTACCTGAT CGAAACCGCG AACTGGAACG ATTTCGTCAT CCTCAACGGC
GGGGTGCGCT ACGATGACTA CAGCATCACC GGCCACACCG CGAGCACATC GACCGGCGTG
CAGTCCGGGA TGTGGAACTA CAATGTCGGC GGCGTGGTCA AGCCGCTGCC TTACGCCAGC
CTCTACGCCG CCTACGCCAC CTCGAGCAAT CCGGTCGGCG CCGAACTCGA CGCTTCGGGC
ACCGCCTATG GCGGCCTCGT GGTCAACAAC ACCACCTTCC AGGCGCTGTC GCCCGAATTG
AACAAGGCGG CGGAGGTCGG CACCAAATGG GAACTGTTCG ATCGGCACCT GCTGGTGACC
GGGGCGCTGT TCCAGACCGA GAAATCGAAC GCGCGCGAGA CCCAGGGCAG CACCATCCTG
TCCACCGGCG TCTATCGCGT GCGCGGCATC GACCTCGGCG TCTCCGGCAA GCTGACCGAG
CGCTGGAGCG TGTTCGGCGG TCTGGTGCTG ATGGAGAGCG AGGTGCTGCA ATCGATCGAT
CCGACCCAGG TCGGCGCCAA GCTCGCCAAC ATCGCGCACC AGTCGTTCAA CGTGCTCACC
AAATATCGCA TCGGCGAGCA GTGGGAGGTC GGCGGGCAGG CGACCTACGC CTCGAAGATC
TACGGCGGCA CCTTCGGCGC CATCAACGGC AACGTGCTGC CGGAGCATTG GCGGTTCGAC
AGCTTCGTCG AATTCAAGGT CGACAAGCAC CTGACCGCCA AGCTGTCGGT CAACAACATC
TTCAACACGA CCTATTACGA CGCGTTCTAT CGCAGCAACT CGCCGTTCGT GTTCATCGCG
CCGGGCCGTT CGGTCTGGCT CAGTTTGCGC GCCGCGCTCT GA
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| Protein sequence | MNGAKAPRSL RAEASIRTFN DELDNHYGRK VSAVAGMIAV ASIGGAEAQQ SSLPAVTVDA
PVARPRPAAK PTPDQVRART ALRRAARRAQ PAQVAPVPFP NAGALSADRN PYADADAPYK
VDRLSGTKFT EPLLNTPRTV TVLSKEILED KNATSLRDIA RSTAGVTLGT GEGGNAFGDR
FFIRGFDARN DVFIDGIRDP AISIRENFFT EQVEILRGPA STMAGRGTAG GAINIVTKQA
TTAGNFTKAE TTFGTDATKR VTVDVNQVIS PTLAVRFDGL YQKANVAGRN YVYDDRWGTL
AAVKWTPTDA VKVTANYVHT DLDGLPDFGV PYNTTLRKPS TSVNVPRDTY YGFINRDFQK
AQQDFGTVIG EFAITPDLTL SNRSRAGRSV LDYIGTLPSN PTATTVQLAS QSRYQVTNVL
ANQTDLTYKF DTGPVKHALI GGAEISRESV MRDTYAGLTS ELTGFQTGGR ITVPLLSPPN
EFEFASTPQR AYNPTFITVD TKSAYLIETA NWNDFVILNG GVRYDDYSIT GHTASTSTGV
QSGMWNYNVG GVVKPLPYAS LYAAYATSSN PVGAELDASG TAYGGLVVNN TTFQALSPEL
NKAAEVGTKW ELFDRHLLVT GALFQTEKSN ARETQGSTIL STGVYRVRGI DLGVSGKLTE
RWSVFGGLVL MESEVLQSID PTQVGAKLAN IAHQSFNVLT KYRIGEQWEV GGQATYASKI
YGGTFGAING NVLPEHWRFD SFVEFKVDKH LTAKLSVNNI FNTTYYDAFY RSNSPFVFIA
PGRSVWLSLR AAL
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