| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2026 |
|---|
| Symbol | |
|---|
| ID | 3909840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2303502 |
|---|
| End bp | 2304929 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637883920 |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_485645 |
|---|
| Protein GI | 86749149 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0174906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.155014 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGCCTGA CCATCACCAA CACGCCGAAG CGCGCCGAGC CGCAGGCCGT GGCCAGCGCC
ATTGAAGCGC TCGCGGCGCG GTTCGGCAAC CGTCTCGTCA CGTCGCTCGC GGTTCGCGAA
CAGCACGGCC ACACCACCAC CTGGCTGCCG AACCAGCCGC CGGACGCGGT GGTGATGGCG
CAGGAGACGG CGGACATCCA GGACGTGGTG CGCATTTGTG CCAAATACCG CGTGCCGGTG
ATCGCGTTCG GCACCGGCAC CTCGCTGGAG GGCCACGTCA ACGCCCCGGC TGGCGGCATT
TCGATCGACC TGCGCGACAT GAACAAGATC CTCAGCGTTC ATGCCGAGGA TCTCGACTGC
GTGATCCAGC CCGGCGTCAC CCGCAAGGCT CTGAACGAGG ACCTTCGCGA CCAGGGCCTG
TTCTTCCCGA TCGATCCGGG CGCCGACGCC TCGATCGGCG GCATGGCGGC GACGCGCGCC
TCCGGCACCA ATGCGGTCCG CTACGGCACC ATGCGCGACA ACGTGCTGGC GCTGAAAGTC
GTTCGCGGCG ACGGCGAGAT CATCACCACC GGCACCCGCG CCAAAAAGTC CGCCGCCGGC
TACGACCTGA CGCATCTGTT CGTCGGCAGC GAGGGCACGC TCGGCATCAT TTCGGAACTG
ACCATCAAGC TGCGCGGCAT CCCCGAGGTG ATCGCGGCGG CCTCGTGCTC GTTTTCGTCG
GTCACCGACG CCTGCCAGGC GGTGATCCTG GCGATCCAGA CCGGCATCCC GCTGGCGCGG
ATCGAGCTGC TCAGCGAGTC CCAGGTCAGG GCCGTCAACG CCTATTCCAA GCTGACGCTG
CCGGAGACGC CGCTGCTGCT GCTGGAATTC CACGGCAGCG AGGTCGAGGT CGGCGAGCAG
TCGAAGAATT TCGGCGCGAT CGCCAAGGAT TGCGGCGGCG GCGACTTCAC CTGGACGACG
CGGCCCGAAG ACCGCAACAA GCTCTGGCAG GCCCGGCACG ACGCCTATTG GTCGGTGCGG
GCGCTGCGGC CCGGCGACGG CGTCGGCGTG GTCGCCACCG ATGTCTGCGT GCCGATCTCC
CGGCTGGCCG ATTGCGTCGC CGAGACTGAG CAGGACATGG CGCGGCTCGG CCTGCTGGCG
CCGATCGTCG GCCATGTCGG CGACGGCAAT TTCCATTGCT CGCTGCTATG CGACGTCAAC
GACGCCGACG AGATGGCGCG CGCCGATGAG TTCATGCACC GTCTGGTCGA GCGGGCGCAG
GCAATGGACG GCACCTGCAC CGGCGAACAC GGCATCGGTC AGGGCAAGCA GAAATATCTT
CAAGCCGAAC TCGGCATCGA GGCGCTGCAG GCGATGCGCG CGATCAAGCA GGCGCTTGAC
CCGCAAAACA TCTTCAATCC CGGCAAGATC CTGCCGCAAG GGCTTTGA
|
|---|
| Protein sequence | MGLTITNTPK RAEPQAVASA IEALAARFGN RLVTSLAVRE QHGHTTTWLP NQPPDAVVMA
QETADIQDVV RICAKYRVPV IAFGTGTSLE GHVNAPAGGI SIDLRDMNKI LSVHAEDLDC
VIQPGVTRKA LNEDLRDQGL FFPIDPGADA SIGGMAATRA SGTNAVRYGT MRDNVLALKV
VRGDGEIITT GTRAKKSAAG YDLTHLFVGS EGTLGIISEL TIKLRGIPEV IAAASCSFSS
VTDACQAVIL AIQTGIPLAR IELLSESQVR AVNAYSKLTL PETPLLLLEF HGSEVEVGEQ
SKNFGAIAKD CGGGDFTWTT RPEDRNKLWQ ARHDAYWSVR ALRPGDGVGV VATDVCVPIS
RLADCVAETE QDMARLGLLA PIVGHVGDGN FHCSLLCDVN DADEMARADE FMHRLVERAQ
AMDGTCTGEH GIGQGKQKYL QAELGIEALQ AMRAIKQALD PQNIFNPGKI LPQGL
|
|---|
| |