| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1990 |
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| Symbol | |
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| ID | 3909496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2260451 |
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| End bp | 2261890 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637883884 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase |
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| Protein accession | YP_485609 |
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| Protein GI | 86749113 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.617501 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAC AACCGCTATG GACGTCCGAT GCGATCATCG CGGCGATGGG CGCGGCGGTG
CAGGGCACGC CGGCCCGCGA CGTGTTCGGC ATCTCGATCG ACAGCCGCAC GCTGGCGCCG
GGCGACGCTT ACTTCGCGAT CAGGGGCGAC GTTCACGACG GCCATGATTT CGTCGAGGCG
GCGCTGAAGG CCGGCGCCGC CCTGGCGGTG GTCGAGACCG CGCAGCGCGG CAAATTCGCC
CCCGATGCGC CGCTGCTGCT GGTCGACGAC GTGCTCGACG GCCTGCGCGA CTTGGGACGC
GCGGCGCGGG CGCGGCTCGA CGCGAAGGTG ATCGCGGTGA CCGGCTCGGT CGGCAAGACC
TCGACCAAGG AGGCGCTGCG CGGCGTGCTC GGCGCGCAGG GCGAGACCCA CGCTTCGGTG
GCGTCGTTCA ACAATCATTG GGGCGTGCCG TTGACGCTGG CGCGCTGCCC GGCGAGCGTG
CGCTATGCGG TGTTCGAGAT CGGGATGAAC CACGCCGGCG AAATTGAACC GCTGGTCAAG
ATGGTGCGAC CACATCTGGC GATCATCACC ACGGTGGAGC CGGTGCATCT CGAATTCTTC
TCCGGCATCG AGGCGATCGC CGACGCCAAG GCGGAAATCT TCTCAGGGCT GGAGCCCGGC
GGCATTGCCG TGCTGAACCG CGACAATCCG ATGTTCAAAC GGCTCACCGC GAGCGCCCGC
AAAGCCGGAG TCGAACGCAT CGTCTCGTTC GGCGTCCACG CCAAGGCCGA TGCGCGGCTG
CGCGACATTG CGCTGCATGC GGATTGCTCA GCGGTGGATG CGAGCATCCT CGGGCACGAC
GTCACCTACA AGCTCAACAT CCCCGGCCGC CACATCGCGA TGAACTCGCT CGCCGTGCTG
GCCGCGGCGG ACCTGGTCGG CGCCGACCTG GCGCTGGCCG CGCTGGCACT GGCGCAGGTC
GAGCCCGCGG CCGGGCGCGG CGTTCGCCGC ACCCTCGAAC TCGGGCAGGG CGCGGCGACG
CTGATCGACG AGAGCTACAA CGCCAATCCG GCGTCGATGG CGGCGGCGCT GGGCGTGCTC
GGCAGCGCCG AGATCAGCGG GCAGGGGCGG CGAATCGCGG TGCTCGGCGA CATGCTGGAA
CTCGGTCCGG CCGGGCCTGA GCTGCATCGC GGCCTCGCCG GAACGGTGCA GAGCAACGCG
GTCGATCTGG TGTTCTGCTG CGGCCCCCTG ATGCACAATC TGTGGGATGC CCTTTCCTCG
GGCAAACGAG GCGGCTATGC AGAGACTGCG GCCGCGCTCG AATCGCAGGT GGTTGCGGCA
GTCCGGTCCG GCGACGTGCT GATGATCAAA GGCTCGCTCG GCTCGCGCAT GAAAACGATT
GTCACCGCGC TCGAGAAGCG CTTTCCCGGC AAGGCCGCGC TCGACGACGC TGCGGTGTGA
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| Protein sequence | MSKQPLWTSD AIIAAMGAAV QGTPARDVFG ISIDSRTLAP GDAYFAIRGD VHDGHDFVEA
ALKAGAALAV VETAQRGKFA PDAPLLLVDD VLDGLRDLGR AARARLDAKV IAVTGSVGKT
STKEALRGVL GAQGETHASV ASFNNHWGVP LTLARCPASV RYAVFEIGMN HAGEIEPLVK
MVRPHLAIIT TVEPVHLEFF SGIEAIADAK AEIFSGLEPG GIAVLNRDNP MFKRLTASAR
KAGVERIVSF GVHAKADARL RDIALHADCS AVDASILGHD VTYKLNIPGR HIAMNSLAVL
AAADLVGADL ALAALALAQV EPAAGRGVRR TLELGQGAAT LIDESYNANP ASMAAALGVL
GSAEISGQGR RIAVLGDMLE LGPAGPELHR GLAGTVQSNA VDLVFCCGPL MHNLWDALSS
GKRGGYAETA AALESQVVAA VRSGDVLMIK GSLGSRMKTI VTALEKRFPG KAALDDAAV
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