| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1980 |
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| Symbol | |
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| ID | 3909485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2249198 |
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| End bp | 2250433 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637883874 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_485599 |
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| Protein GI | 86749103 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.539609 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGTC GCGACCAAGC TGCACGCGTT CTGAGGTCCG AGCCCGCCCA AGAGGCGGAC
CCGCGTGCCG CCGTGCCGCC GCAAGCCGCG CGCCCGTTGC CGGACGATCC ATCGACGCTG
AAGCGCGCCG AGCCGGTGCA GCCCGACACC AAGTCCGAGC CGGTCGCCCC GGCGACGGAG
CCCGCGGCGG CGGCGAAGAA GCCGGGCCGG AAGCGGCTGG CGCTGATCGC GGTCGGCCTC
GCGGCGCTGG CGGCAGGCGC TTATTTCGGC ACCGACTACA TGCTGGTCGG CCGCTTCATG
GTGTCGACCG ACGACGCTTA TGTGCGCGCC AACAACACCA CGCTCGGCGC CCGCGTCGCC
GGCCATATCG CCGCGATCGT CCCGCGCGAC AACACGCTGG TGAAGGCCGG CGACGTGGTG
TTCCGGATCG ACGACGGCGA CTATCGGATC GCGGTCGATA CCGCGCGCGC CAAGATCGCC
ACGCAGCAGG CGACCATCGA ACGGATCGGC CGCCAGGTCA CCGCGCAGGA AAGCGCGGTG
GAGCAGGCGC AGGCGCAGCG CGAATCCGCC GAAGCCTCGG CCAGGCGCGC CACGCTCGAT
TTCGACCGCC AGCAGGCGCT GAGCACCAAG GGCTTCGCCT CCCGCGCGGT GTTCGAGACC
TCGCAGGCGA GCCGCGACCA GGGCACCGCC TCGGTCGCCG CCGCCAAGGC GGCCTATGAC
GCCGCGCGCG ACAATGTCGA GGTCACCAAG GCGCAGCAGA ACGAGGCCCG CGCCCAACTC
GTCGAACTGC AGAGCTCGCT CGCCAAGGCC GAGCGCGATC TCGACTTCAC CAATGTCCGC
GCGCCGGTCG ACGGCGTGTT CTCCAACCGC ATGGTCAATA CCGGCGATTA CATCAACGCC
GGCCAGCGCC TCGGCAACAT CGTGCCGCTC AGCGGCGTGT ACATCGACGC CAATTTCAAG
GAAACCCAGC TCGCCCGCCT GAAGCCCGGC CAGACCGTCG ACATCTCGGT CGACGCTTAC
TCCGGCCGCA AGATCGAGGG CACGGTGGAC AGCCTGTCGC CCGCGGCGGG GCAGGTGTTC
ACGCTGCTGC CGCCCGACAA CGCCACCGGC AATTTCACCA AGGTCGTGCA GCGCGTGCCG
GTCCGCATCC GCGTGCCCGC CGAGGTGGCA CGCGAGGGCC TGCTGCGCGC CGGCATGTCG
GTCTATATCC GGGTCGACAC AAGGACCGGG AAGTAA
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| Protein sequence | MSGRDQAARV LRSEPAQEAD PRAAVPPQAA RPLPDDPSTL KRAEPVQPDT KSEPVAPATE
PAAAAKKPGR KRLALIAVGL AALAAGAYFG TDYMLVGRFM VSTDDAYVRA NNTTLGARVA
GHIAAIVPRD NTLVKAGDVV FRIDDGDYRI AVDTARAKIA TQQATIERIG RQVTAQESAV
EQAQAQRESA EASARRATLD FDRQQALSTK GFASRAVFET SQASRDQGTA SVAAAKAAYD
AARDNVEVTK AQQNEARAQL VELQSSLAKA ERDLDFTNVR APVDGVFSNR MVNTGDYINA
GQRLGNIVPL SGVYIDANFK ETQLARLKPG QTVDISVDAY SGRKIEGTVD SLSPAAGQVF
TLLPPDNATG NFTKVVQRVP VRIRVPAEVA REGLLRAGMS VYIRVDTRTG K
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