| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1954 |
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| Symbol | |
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| ID | 3908033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 2220611 |
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| End bp | 2222551 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637883848 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_485573 |
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| Protein GI | 86749077 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATCC GCTCCAATCC CGACACCACG CGTCCCGCCG TCACCACCGG CGGCCTGCCC
TCCTCGCGCA AGATCTATGC TGTGCCCGCC ACCGCGCCGG ATCTGCGCGT GCCGCTGCGC
GAGATCATGC TGAGCGAAGG CGCCGGCGAG CCGAACCTGC CGGTGTACGA CACCTCGGGC
CCCTACACCG ATCCCGGCGT CACCATCGAC GTCAACAAGG GCCTGTCGCG CGCCCGCACG
GAGTGGGTCA AGCAGCGCGG CGGCGTCGAG CAATATGAAG GCCGCGACAT CAAGCCGGAA
GACAACGGCA ATGTCGGCGC AGCCCATGCG GCGAAGTCGT TCACCGCGCA TCACCAGCCG
CTGCGCGGCG TCGGCGACGC GCCGATCACG CAATACGAAT TCGCCCGCAA GGGGATCATC
ACCAAGGAGA TGATCTACGT CGCCGAGCGC GAGAATCTCG GCCGCAAGCA GCAACTGGAG
CGCGCCGAAG CCGCGCTGGC CGACGGTGAA AGCTTCGGCG CCGCGGTGCC GGCGTTCATC
ACCCCGGAAT TCGTCCGCGA CGAGATCGCG CGCGGCCGCG CCATCATCCC GGCCAACATC
AATCACGGCG AACTCGAGCC GATGATCATC GGCCGCAACT TCCTCACCAA GATCAACGCC
AACATCGGCA ACTCGGCGGT GACCTCGTCG GTCGAGGAGG AAGTCGACAA GATGGTGTGG
GCGATCCGCT GGGGCGCCGA CACCGTGATG GACCTCTCCA CCGGCCGCAA CATCCACACC
ACCCGCGAAT GGATTTTGCG CAACTCGCCG GTCCCGATCG GCACCGTACC GATCTATCAG
GCGCTGGAGA AGTGCGACGG CGATCCGGTC AAGCTCACCT GGGAGCTGTA CAAGGACACG
CTGATCGAGC AGGCCGAACA GGGCGTCGAT TACTTCACGA TCCACGCCGG CGTGCGGCTG
CAATACATCC ACCTCACCGC CGATCGCGTC ACGGGCATCG TTTCCCGTGG CGGATCGATC
ATGGCGAAGT GGTGCCTGGC GCATCACCAG GAGAGCTTCC TCTACACGCA TTTCGACGAG
ATCTGCGACC TGATGCGGAA ATACGACGTG TCGTTCTCAT TGGGCGACGG GCTGCGCCCG
GGCTCGATCG CCGACGCCAA CGACCGCGCG CAATTCGCCG AACTGGAGAC GCTCGGCGAA
CTCACCAAGA TCGCCTGGGC CAAGGGCTGC CAGGTGATGA TCGAAGGCCC CGGCCACGTG
CCGCTGCACA AGATCAAGAT CAACATGGAC AAGCAGCTCA AGGAATGCGG CGAGGCGCCG
TTCTATACGC TCGGCCCGCT GACCACCGAC ATCGCGCCGG GCTATGATCA CATCACCTCC
GGCATTGGCG CCGCGATGAT CGGCTGGTTC GGCTGCGCGA TGCTGTGCTA CGTCACGCCG
AAGGAACATC TCGGCCTGCC CGACCGCAAC GACGTCAAGA CCGGCGTGAT CACCTACAAG
ATCGCCGCCC ACGCCGCCGA CCTCGGCAAG GGCCACCCCG CAGCCCAGTT GCGCGACGAC
GCGCTGTCCC GCGCCCGCTT CGACTTCCGC TGGCAGGACC AATTCAACCT CGGCCTCGAC
CCGGATACGG CGAAAGCCTT CCACGACGAA ACCCTGCCCA AGGAAGCCCA CAAGGTCGCG
CATTTCTGCT CGATGTGCGG CCCGAAATTC TGCTCGATGA AGATCACGCA AGATGTGCGC
GACTACGCGG CGGGATTGGG CGACAACGAG AAGGCGGCGC TGAACCTCGC CGGCGCCGGC
TCGTTCGGCA GCGTCGGCAT GACGATGTCC GGCGTCATCG AAGACGGCAT GGCGCAGATG
AGCGAGAAGT TTCGGGATAT GGGGGAGAAG CTGTATCTCG ATGCGGAGAA GGTGAAGGAG
AGCAACAAGG CGCTGTCGTA G
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| Protein sequence | MNIRSNPDTT RPAVTTGGLP SSRKIYAVPA TAPDLRVPLR EIMLSEGAGE PNLPVYDTSG
PYTDPGVTID VNKGLSRART EWVKQRGGVE QYEGRDIKPE DNGNVGAAHA AKSFTAHHQP
LRGVGDAPIT QYEFARKGII TKEMIYVAER ENLGRKQQLE RAEAALADGE SFGAAVPAFI
TPEFVRDEIA RGRAIIPANI NHGELEPMII GRNFLTKINA NIGNSAVTSS VEEEVDKMVW
AIRWGADTVM DLSTGRNIHT TREWILRNSP VPIGTVPIYQ ALEKCDGDPV KLTWELYKDT
LIEQAEQGVD YFTIHAGVRL QYIHLTADRV TGIVSRGGSI MAKWCLAHHQ ESFLYTHFDE
ICDLMRKYDV SFSLGDGLRP GSIADANDRA QFAELETLGE LTKIAWAKGC QVMIEGPGHV
PLHKIKINMD KQLKECGEAP FYTLGPLTTD IAPGYDHITS GIGAAMIGWF GCAMLCYVTP
KEHLGLPDRN DVKTGVITYK IAAHAADLGK GHPAAQLRDD ALSRARFDFR WQDQFNLGLD
PDTAKAFHDE TLPKEAHKVA HFCSMCGPKF CSMKITQDVR DYAAGLGDNE KAALNLAGAG
SFGSVGMTMS GVIEDGMAQM SEKFRDMGEK LYLDAEKVKE SNKALS
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