| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1912 |
|---|
| Symbol | |
|---|
| ID | 3907991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2184631 |
|---|
| End bp | 2186490 |
|---|
| Gene Length | 1860 bp |
|---|
| Protein Length | 619 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637883806 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_485531 |
|---|
| Protein GI | 86749035 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.693506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGTGC TGGCGATGAG CGCCTGCGTG CTCGCGCTCG TGGTCTGGAA GGGCTACGAC
GCCAGACGCA ATGCGCTCGC GCAGAGCGAG ACGGAGATGC GCAATCTGGC GCATTCGCTG
GCGGAACACG CCTCCCACAC GATTCAATCG GCCGACGTGG TGATGGACGA TCTCGTCGCC
TTCATCCGGT TCCAGCCGTT TCCCGATCGC GCTCGGTTCG ACGCGCGGCT GCGCGAGGTC
TCGGAGAAGC TGCCCCAGAT CAAGGAACTC GCGACCCTCG ACGCGAAAGG CGACGTCGAC
CATGCGTCGG TGACGCCGCC TCCCGCTATC AACAATGCCG ACCGCGACTA CTTCGTCTAC
CACCGCGATC ATGCCGACCC GAAGCTGCGG ATTACTGGCC CGATCGTCTC GCGCGCCTCG
GGTCAACCGG TGATTGCAGT GACGCGACGA CTCGAAACCG CAGACGGCGG CTTCGCGGGC
ATCGTCGTCG CAACCATCGA GAGCGACTAT TTCACCGAAT TCTACAAGAC TTTCGATCTC
GGCGCCGGCA GCGGCATCAC TTTGTCCGGC GGCGACGGCC ATATCCTGGT CCGTTGGCCG
ACGGCGGCGG GCGACCTGTC GAAGAGCCGG CTTTTCGAGA GAATGCTGCC GCGCAGCCCG
GTCGGATACA ATCTCGCAAT CTCGCCGTTC GACGGCCTTC AGAAATACTA TGCCTACGAG
CAGCTATCGC GCTATCCGCT GGTCGTCACG GTCGCGCGCA CCGAGGTGTC GGTGCTGGCC
GACTGGCGCG AGGCGGTCCG CTCCGATGCC GTGGTGGCGA CGGCGGCGCT CGCCTGCATC
GTGCTGCTGG CGGCCGGGCT CGCGGTGCAA CTGCGCAACC GCGAGCGCTT CGAGAGGCTG
CTGCGCGAGC GTGACGCGCG TCACCGTCTG ATCGACGCGA ACATCGGCGA CGTCGTCGTC
GTGCTCGACG GCCGGGGCGT CGTCACCTTC GTGTCGATGT CGATCGAGAC CGTGCTCGGT
TTCAGGCCGG AGGAGGTTCT GGGCCGCGTC TATTTCGACA TGATGCACCC CGACGACGTC
GCGGGCCTCC AGGCGATGGG CAAGCGTCTG CCTGACGTCC CCAACGGGCT GCGCGCCGAG
TTCCGGATGG AACGCGCCGA CGGCACGATG GTCTGGCTCG AGGCCAATTT CAGGTTCACC
CGCCAGGATG GCCGGCCGGG GCGCAGTATC GTCTGCACGC TGCGCGACGT CACCCGCCGC
AAGGAGATGG AGGACGAAGT CGAGGCACTC AATTCCCGCC TTGCGGAAAT GGCCAGGACC
GACGCCCTCA CCGGCTTGCC GAACCGCCGT GCGCTCGACG ATTTCATCGC CGGCGAATTC
GAGGCGAGCC ATGACCTGTC GGTGCTGATG ATCGACGTCG ACGACTTCAA AGGCTTCAAC
GACCGTCTCG GCCACCACGC CGGCGATGAC GCGCTCAGGC AACTCGGTCG ATTGCTGGCC
GGGACTGCGG CCGGCGCAGG CGGTTTCGCT GCGCGCTACG GCGGCGAGGA ATTCACCATC
GTCCTGCCCG GCACCGGGAA GGCCGTCGCG ATCGCCTTCG CCGAAGAGCT GCAGGCAGCC
ATCCGCGCGC TCGGCATCGT CAACCCCAGC GCGGCGCGCG GCAGACTCAC CGTGAGCATC
GGCATCGCCG ACAAGATCGC CAGTATCTGC GACCCGGCCA CGCTGCTCCG CTGTGCCGAC
ATCGCGCTCT ACGAGGCGAA GCGGCGCGGC CGCGATTGCA GCGTTGCGGC CCCTGCCTTT
GTCGGCGACG CCGGATCGTT GGTCCCCGAC GTCGCCACCC GGACCGGCAC GCCGGCCTGA
|
|---|
| Protein sequence | MFVLAMSACV LALVVWKGYD ARRNALAQSE TEMRNLAHSL AEHASHTIQS ADVVMDDLVA
FIRFQPFPDR ARFDARLREV SEKLPQIKEL ATLDAKGDVD HASVTPPPAI NNADRDYFVY
HRDHADPKLR ITGPIVSRAS GQPVIAVTRR LETADGGFAG IVVATIESDY FTEFYKTFDL
GAGSGITLSG GDGHILVRWP TAAGDLSKSR LFERMLPRSP VGYNLAISPF DGLQKYYAYE
QLSRYPLVVT VARTEVSVLA DWREAVRSDA VVATAALACI VLLAAGLAVQ LRNRERFERL
LRERDARHRL IDANIGDVVV VLDGRGVVTF VSMSIETVLG FRPEEVLGRV YFDMMHPDDV
AGLQAMGKRL PDVPNGLRAE FRMERADGTM VWLEANFRFT RQDGRPGRSI VCTLRDVTRR
KEMEDEVEAL NSRLAEMART DALTGLPNRR ALDDFIAGEF EASHDLSVLM IDVDDFKGFN
DRLGHHAGDD ALRQLGRLLA GTAAGAGGFA ARYGGEEFTI VLPGTGKAVA IAFAEELQAA
IRALGIVNPS AARGRLTVSI GIADKIASIC DPATLLRCAD IALYEAKRRG RDCSVAAPAF
VGDAGSLVPD VATRTGTPA
|
|---|
| |