| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1884 |
|---|
| Symbol | |
|---|
| ID | 3908079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2154499 |
|---|
| End bp | 2156553 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637883778 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_485503 |
|---|
| Protein GI | 86749007 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.360227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTTCCG GGAACTTTGC CGTTCCTGAG GCTTTGTTAC GAGACGACCG GGCGTTGTTC
GACTTCCAGG GAAATAGGGC TACGGTCCTA TCGCATCACG TGAACAGATC GACTCAAGCA
TTCCAGACCG TCTCGGCTGG CGGCGCTTTC CAAATTGAAG ATATCTTCCC GATCATCGAC
AGCGGCCGAT TTCCCGTCAA GCGGGTTGTC GGCGAGCCCA TCGAGATCTG GGCGGACGTG
TATCGCGACG GTCACGAGGT GATCGCTGCG GCGCTGGTCT GGCGGCGCGA GCAGGATCAG
GATTGGCAGC GCGTCCCGAT GCGTCACGTC GTCAACGATC GCTGGACCGC CTCCTTCGTG
CCCGATCATA TTGGACGATA TGTCTATGCG ATCGAAGCGT GGACCGACGA ATTCGCGACC
TGGCGGCACG GCATCGAGCT GAAGCAGAAG GCGGGGCAAG ACGTCGCACT CGACGCGCTG
GAAGGCGCCG GGATGCTGAC CAAAGCTCTG AACGGCGGGC ACGAAGCGCT GACCGTTATT
CAGCGGCAAT GCGAGGACTA TCTGCAGACC GGCGACGTGG CGCCTTTGCT CACCCCCGAA
TTGCGCGACG CGATGGCCGA AAGCCAGGCG CGGCCGGACG TCACCCGCTC CGCGCTGCTG
CCGCTGATGA TCGACCGCGA ACGCGCCCGC TGCGGAGCGT GGTACGAGAT GGTGCCGCGC
AGCCAGAGCA CGGTGCCCGG CCAGCACGGC ACCTTCCGCG ACTGCATCGC AAGGTTGCCG
GACATCGCGG CGATGGGCTT CGATGTGCTG TATTTCACGC CGATCCACCC GATCGGCCGC
GTCAATCGCA AAGGCCGCAA CAACTCGCTG AAGGCCGACC CCGGCGATCC GGGCAGCCCC
TATGCGATCG GTGCTGAGGA AGGCGGCCAC GACGCGGTGC ATCCCGAGCT CGGCACGCTC
GACGATTTCC ACGCGCTGGT CGAAGCCTGC AAGCTGGTGA ACGTCGAGAT CGCGCTCGAC
ATCGCGGTGC AATGCTCGCC GGATCACCCG TGGCTGAAGC AGCATCCGGA CTGGTTCAAG
CGCCGTCCCG ACGGCTCGAT GAAATACGCC GAGAACCCGC CGAAGAAATA CGAGGACATC
GTCAATCCGG ATTTCACCTG CGAGGACGCC GGCTCGCTGT GGAATGCGCT GCGCGACGTG
ATCCTGTTCT GGGTCGACCA CGGCGTGAAG ATCTTTCGGG TGGACAACCC GCACACCAAG
CCGCTGCGGT TCTGGGAATG GCTGATCCAC GAGGTTCAGC TCGCTCACCC CGACGTGCTG
TTTCTCGCCG AGGCCTTCAC CCGGCCGAAG CTGATGAAGG GGCTCGCCAA ACTCGGCTTC
AGCCAGTCCT ACACCTACTT CACCTGGCGG ACGCAGAAGT GGGAGATCGA GGAATACTTG
CGCGAACTGA CAGGCTATCC GGAGCGTGAT TTCTACCGCC CGAATTTCTT CGTCAATACC
CCGGACATCC TCCCCTACCA TCTGCAGGGC GGCGAGCCGT GGATGTTCAA ATCCCGCCTT
GCGCTCGCCG CGATGCTGTC ATCGACCTAT GGCATCTATA ACGGCTTCGA GCTGATCGAA
CACGCGCCGA TCCCCGGCAA GGAGGAGTAT CTCGATTCCG AAAAATACGA GATCAAGGTC
CGCGACTGGG ACAGACCGGG CAATATCAAG CCTTATATCC GCGAGATCAA TCAGGCCCGC
CGCAACAATC CGGCGCTTCA GCAGACGAGC AATCTTCGCT TCGTGGATAT CCAGGATCCC
AACGTGACCG GCTTCGTCAA ATACTCAACG GACCTGACCA ACGTCGTGGC CGTCGCGATC
GCGCTGTCGC GCGATTTCCA TGAATTCTGG TTTCCGCTCG GCGACACCCA GGTCGAGGTC
GGCGGCGAGC GCCGCCCGGT CGTGGCGGTC GAGAATCTGC TCACCGGCGA GCGGCACGCC
GTGGAATGGG GCGGCCTCAC GCTACGGATC GATCCGCAAC GCGATCCTGC GCTGCTTTTC
CGCTGCCTGG CGTGA
|
|---|
| Protein sequence | MSSGNFAVPE ALLRDDRALF DFQGNRATVL SHHVNRSTQA FQTVSAGGAF QIEDIFPIID
SGRFPVKRVV GEPIEIWADV YRDGHEVIAA ALVWRREQDQ DWQRVPMRHV VNDRWTASFV
PDHIGRYVYA IEAWTDEFAT WRHGIELKQK AGQDVALDAL EGAGMLTKAL NGGHEALTVI
QRQCEDYLQT GDVAPLLTPE LRDAMAESQA RPDVTRSALL PLMIDRERAR CGAWYEMVPR
SQSTVPGQHG TFRDCIARLP DIAAMGFDVL YFTPIHPIGR VNRKGRNNSL KADPGDPGSP
YAIGAEEGGH DAVHPELGTL DDFHALVEAC KLVNVEIALD IAVQCSPDHP WLKQHPDWFK
RRPDGSMKYA ENPPKKYEDI VNPDFTCEDA GSLWNALRDV ILFWVDHGVK IFRVDNPHTK
PLRFWEWLIH EVQLAHPDVL FLAEAFTRPK LMKGLAKLGF SQSYTYFTWR TQKWEIEEYL
RELTGYPERD FYRPNFFVNT PDILPYHLQG GEPWMFKSRL ALAAMLSSTY GIYNGFELIE
HAPIPGKEEY LDSEKYEIKV RDWDRPGNIK PYIREINQAR RNNPALQQTS NLRFVDIQDP
NVTGFVKYST DLTNVVAVAI ALSRDFHEFW FPLGDTQVEV GGERRPVVAV ENLLTGERHA
VEWGGLTLRI DPQRDPALLF RCLA
|
|---|
| |